PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_41618
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family GRAS
Protein Properties Length: 594aa    MW: 63877.2 Da    PI: 6.7323
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_41618genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS344.91.3e-1052225942374
        GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
                 ++ Ll+ A+a+++g++e a a La l+  a+p+gdp qRl+a+++ AL +r++ + ++ +  lp+ +     s+e+ +a +l++e+sP++++++++aN 
  PEQU_41618 222 RQMLLDTATAITEGNQEIAAANLAVLKRAANPRGDPDQRLTAMMVAALVSRMNPMPPGSS--LPVADVC---SAEHQTASHLLYEASPCFQLGFMAANL 315
                 689***************************************************544433..5555444...88999999******************* PP

        GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpeg......ppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlelee 193
                  Il+a++ + ++H++Dfdi+qG Q ++L++a+++R  +      pp ++iT+v++ +++++++l+ +g+rLak+Ae+lgv ++f++ v +r++dl+  +
  PEQU_41618 316 SILDATKDSPKIHVLDFDIGQGDQLASLIHAISERYVQrsptrlPPCVKITAVSPLQANETTNLRVVGDRLAKLAERLGVGLRFSI-VNSRIQDLNHTT 413
                 ***********************************9333456669****************************************9.79********** PP

        GRAS 194 LrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgr 292
                 L ++pgEal+Vn+++ l r+ desvs++++rde+L+ vkslsP++v++veqe++ n++++++rf+ea+ ++ al++sl+a++ res er+ vE+  l+r
  PEQU_41618 414 LPCEPGEALVVNFAFFLSRIADESVSTANPRDELLRRVKSLSPRIVTMVEQEMNSNTAPLATRFAEACAHFGALLESLDATATRESTERARVEAC-LAR 511
                 *********************************************************************************************87.*** PP

        GRAS 293 eivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 ++ n +a ega+r+er+e ++kWr+r+++aGF+pvpl +++++ +kl l+ +  + g++++ee g+l  gW +r L+++SaWr
  PEQU_41618 512 KAANSIAREGADRIERCEVYGKWRARMGMAGFTPVPLCSTVTEAVKLRLSSIRnNPGFTLKEEAGWLGCGWVGRVLTVASAWR 594
                 *****************************************************99***************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098549.975195573IPR005202Transcription factor GRAS
PfamPF035144.7E-103222594IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
Sequence ? help Back to Top
Protein Sequence    Length: 594 aa     Download sequence    Send to blast
MASGFPSRDL RGGFGFGAGS AVHMQYQQRS DGGSVIGAAG LLKRSLTEME RQQQMQHAMY  60
VRSVKQKTHF TPPSPISHLS SVYLSAASTS TTSSILSSVS SASASAPFVE QGNPNSTTWS  120
FQETIADAEI ESEKKSSMTN RLLELERQLL DDEEDEVSIS GSAVTSNEWN ETMEKLMSPP  180
PPPQPMAPVA NLHPLSPSPT TSSSSSSGSS SSCTPSSATP SRQMLLDTAT AITEGNQEIA  240
AANLAVLKRA ANPRGDPDQR LTAMMVAALV SRMNPMPPGS SLPVADVCSA EHQTASHLLY  300
EASPCFQLGF MAANLSILDA TKDSPKIHVL DFDIGQGDQL ASLIHAISER YVQRSPTRLP  360
PCVKITAVSP LQANETTNLR VVGDRLAKLA ERLGVGLRFS IVNSRIQDLN HTTLPCEPGE  420
ALVVNFAFFL SRIADESVST ANPRDELLRR VKSLSPRIVT MVEQEMNSNT APLATRFAEA  480
CAHFGALLES LDATATREST ERARVEACLA RKAANSIARE GADRIERCEV YGKWRARMGM  540
AGFTPVPLCS TVTEAVKLRL SSIRNNPGFT LKEEAGWLGC GWVGRVLTVA SAWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A6e-4923959421375GRAS family transcription factor containing p
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010919084.10.0PREDICTED: scarecrow-like protein 8
TrEMBLM0SSA20.0M0SSA2_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr4P26400_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP41883474
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52510.11e-112SCARECROW-like 8