PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_41543
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family GeBP
Protein Properties Length: 390aa    MW: 42655 Da    PI: 4.9211
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_41543genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573117.38.7e-3795193297
      DUF573   2 lfqrlwseeDeivlLqGlidfkaktgk..spsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 
                 lfqrlw++eDei++LqG+++f++++g+   +++ d+  fye++kk+++++++k+ql+eK+rrLKkK+++ v+++ sgk+++f+++h+q +fe+++kiW 
  PEQU_41543  95 LFQRLWTDEDEITILQGFLEFTTQRGTthASHQyDTGPFYEQIKKQLQLEFNKNQLIEKLRRLKKKYRNVVNRMVSGKDFVFKSAHEQATFEIARKIWS 193
                 79************************98867778****************************************************************6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045048.8E-3396193IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MEDDLDDDEE EFPDLSPPQH SQPSSLPKDE PDSPITFLNP NPNHAVTPTR TAPQNGSIKA  60
VPISVSDIPP AHIVSAAEDS RRVVSATSVD DSRRLFQRLW TDEDEITILQ GFLEFTTQRG  120
TTHASHQYDT GPFYEQIKKQ LQLEFNKNQL IEKLRRLKKK YRNVVNRMVS GKDFVFKSAH  180
EQATFEIARK IWSASVKRGR DSEDDEFTPN PASSILEFDS GFGVGAAAGD GFLSSERKLS  240
RSSRKRIRMT NSEQEAAVAA AAAAANGVAV EVPIAAPLDP TSSVPIPIII EETVKSCLSP  300
LFKELLQSAM AGPQGGLIPG VGGIGGGGLL GMNPLQLGIG NLQGNLLVDE KWRNQNILEL  360
EVYLKRIELM RDQIKSTLEE LKSSTPSAGD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020597486.10.0probable transcription factor At3g04930
RefseqXP_020597487.10.0probable transcription factor At3g04930
RefseqXP_020597488.10.0probable transcription factor At3g04930
RefseqXP_020597490.10.0probable transcription factor At3g04930
TrEMBLA0A2I0W7H10.0A0A2I0W7H1_9ASPA; Mediator-associated protein 1
STRINGXP_008807916.13e-97(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP97437123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04930.21e-46DNA-binding storekeeper protein-related transcriptional regulator