PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_41087
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family B3
Protein Properties Length: 135aa    MW: 15763.6 Da    PI: 10.3618
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_41087genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B343.94.2e-14481291495
                 T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE....EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
          B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr....yvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                   l +p +f+++h+++ ++   ++l d++grs  v++  + k++r    + ++ GW eF+  n+L +gD ++F+ ++++   + v+
  PEQU_41087  48 PYLNIPFRFLTSHKLERKS--RVILIDPKGRSSLVRI--TIKKRRpiiqCCFSMGWHEFCLRNHLSAGDKCIFEIKSEQADAYIVH 129
                 5689*********988444..7***************..55555544789999*********************877655445555 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.109.8E-2032134IPR015300DNA-binding pseudobarrel domain
CDDcd100172.20E-1333117No hitNo description
SuperFamilySSF1019367.46E-1733134IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.22135135IPR003340B3 DNA binding domain
SMARTSM010190.005935134IPR003340B3 DNA binding domain
PfamPF023623.8E-1146129IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 135 aa     Download sequence    Send to blast
MLEASSPLNK QEESKASKTA EKLFKQFCKS LGPHFCITLK FCNLRSRPYL NIPFRFLTSH  60
KLERKSRVIL IDPKGRSSLV RITIKKRRPI IQCCFSMGWH EFCLRNHLSA GDKCIFEIKS  120
EQADAYIVHV HIIRE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020595094.11e-95B3 domain-containing protein Os03g0212300-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP47483264
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G32460.12e-06B3 family protein