PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_40468
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family WRKY
Protein Properties Length: 394aa    MW: 43732.8 Da    PI: 8.1046
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_40468genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY93.81.3e-29180239159
                 ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                 ++Dg++WrKYGqK  kg+++pr+YYrCt a gCpv+k+v+r+aed ++++ tYeg+Hnh+
  PEQU_40468 180 MNDGCQWRKYGQKISKGNPCPRAYYRCTVApGCPVRKQVQRCAEDMSILISTYEGNHNHP 239
                 58***************************99****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.6E-31165241IPR003657WRKY domain
SuperFamilySSF1182901.2E-26173241IPR003657WRKY domain
PROSITE profilePS5081129.034175241IPR003657WRKY domain
SMARTSM007748.2E-36180240IPR003657WRKY domain
PfamPF031064.0E-26181239IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    Send to blast
MCEVREENER LKAILAQILR DYQSLQTRIF EIIKRGQAKQ KPAEADPSSL SLHNNEHELV  60
SLCLGSGPSF MIKQEEKTSC NGKETKGEKD NQIKRGLALG MECKMDEEEN DAKNEVQQSN  120
SLESSSEGTE NKEETAVGDQ RWPPSKAMKN LKSEEDEASP QVQVKRARVS VRARCDAHTM  180
NDGCQWRKYG QKISKGNPCP RAYYRCTVAP GCPVRKQVQR CAEDMSILIS TYEGNHNHPL  240
PISATAMAST TAAAASMLIS ASSSSLPVTS PHQITTGLNF SFPDISHQNA QFYTSNPSIS  300
PSLSQPTITL DLTNPHGFSS TSPRSFYSQA SFSFSPSESS SSWKSGGGYF NHGAHQPYYK  360
SLYRQSQESL FHSYAHKVNI ISFSQYSFTI ITKK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A8e-21167241174WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in the transcriptional regulation of terpene biosynthesis in glandular trichomes (PubMed:24884371). Binds to the promoter of the linalool synthase TPS5 and promotes TPS5 gene transactivation (PubMed:24884371). In association with WRKY72B, contributes to basal defense against root-knot nematodes (RKNs) and potato aphids, as well as Mi-1-mediated gene-for-gene resistance to these pests (PubMed:20409007). Both WRKY72A and WRKY72B are not required for gene-for-gene resistance mediated by Pto, another tomato R gene (PubMed:20409007). {ECO:0000269|PubMed:20409007, ECO:0000269|PubMed:24884371}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by infection with the root-knot nematode (RKN) Meloidogyne incognita and potato aphids. {ECO:0000269|PubMed:20409007}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020588396.10.0probable WRKY transcription factor 72, partial
SwissprotA0A3Q7GFB54e-83WK72A_SOLLC; WRKY transcription factor 72A
TrEMBLA0A061EM501e-98A0A061EM50_THECC; WRKY DNA-binding protein 72, putative
TrEMBLA0A1D1YDU11e-98A0A1D1YDU1_9ARAE; Putative WRKY transcription factor 72 (Fragment)
STRINGEOY033942e-99(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP50473862
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15130.17e-64WRKY DNA-binding protein 72
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Spyropoulou EA,Haring MA,Schuurink RC
    RNA sequencing on Solanum lycopersicum trichomes identifies transcription factors that activate terpene synthase promoters.
    BMC Genomics, 2014. 15: p. 402
    [PMID:24884371]