PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_40272
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family LBD
Protein Properties Length: 156aa    MW: 17589.7 Da    PI: 6.7907
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_40272genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260104.21.2e-3228814100
      DUF260  14 kdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100
                 ++C++apyf  e+p+kf nvhk+FGasnv kll++l +++reda++sl+yeAear++dPvyG+vg i+ lq+++++l++el+++++e
  PEQU_40272   2 PSCIFAPYFHPEEPQKFINVHKVFGASNVAKLLNDLLPSQREDAVNSLAYEAEARIKDPVYGCVGAISVLQRHIQRLQKELDATNAE 88 
                 78*******************************************************************************999876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089121.204189IPR004883Lateral organ boundaries, LOB
PfamPF031951.0E-32286IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 156 aa     Download sequence    Send to blast
MPSCIFAPYF HPEEPQKFIN VHKVFGASNV AKLLNDLLPS QREDAVNSLA YEAEARIKDP  60
VYGCVGAISV LQRHIQRLQK ELDATNAELL RYAYAEQRSP NVSTMISPSL RVHYPHPPLP  120
AHGLWPSFVS YHHPHSQNDT CSNSSSGELN QRGEWE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-5119623118LOB family transfactor Ramosa2.1
5ly0_B1e-5119623118LOB family transfactor Ramosa2.1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtNot known; ectopic expression of LOB leads to alterations in the size and shape of leaves and floral organs and causes male and female sterility.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Positively regulated within the shoot apex by both ASYMMETRIC LEAVES 1 (AS1) and ASYMMETRIC LEAVES 2 (AS2/LBD6) and by KNAT1. {ECO:0000269|PubMed:11934861}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020588472.11e-114LOB domain-containing protein 25-like
RefseqXP_020594390.11e-114LOB domain-containing protein 25-like
RefseqXP_020596227.11e-114LOB domain-containing protein 25-like
SwissprotQ9FML44e-49LOB_ARATH; Protein LATERAL ORGAN BOUNDARIES
TrEMBLA0A2I0X5517e-77A0A2I0X551_9ASPA; Protein LATERAL ORGAN BOUNDARIES
STRINGGorai.012G063800.19e-54(Gossypium raimondii)
STRINGXP_008795982.19e-54(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP88133545
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63090.42e-51LBD family protein
Publications ? help Back to Top
  1. Xu C, et al.
    Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration.
    Nat Plants, 2018. 4(2): p. 108-115
    [PMID:29358751]
  2. Liu J, et al.
    The WOX11-LBD16 Pathway Promotes Pluripotency Acquisition in Callus Cells During De Novo Shoot Regeneration in Tissue Culture.
    Plant Cell Physiol., 2018. 59(4): p. 734-743
    [PMID:29361138]