PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_39797
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family AP2
Protein Properties Length: 632aa    MW: 68774.5 Da    PI: 6.5877
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_39797genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP245.71.6e-14213272155
         AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                 s y+GV++++++gr++A+++d  +   g  ++ ++++lg ++ +++Aa+a++ a++k++g
  PEQU_39797 213 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqsRKgRQVYLGGYDKEDKAARAYDLAALKYWG 272
                 57*******************666664477446**********99*************98 PP

2AP246.97e-15315366155
         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  PEQU_39797 315 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 366
                 57****************988532...5************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.2E-11213272IPR001471AP2/ERF domain
CDDcd000184.89E-21213282No hitNo description
SuperFamilySSF541716.41E-17213282IPR016177DNA-binding domain
SMARTSM003805.9E-29214286IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.2E-15214281IPR001471AP2/ERF domain
PROSITE profilePS5103218.927214280IPR001471AP2/ERF domain
PRINTSPR003674.7E-6215226IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-17315375IPR016177DNA-binding domain
PfamPF008478.7E-10315366IPR001471AP2/ERF domain
CDDcd000183.98E-24315374No hitNo description
SMARTSM003802.8E-33316380IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.9E-18316374IPR001471AP2/ERF domain
PROSITE profilePS5103219.045316374IPR001471AP2/ERF domain
PRINTSPR003674.7E-6356376IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 632 aa     Download sequence    Send to blast
MASINNWLAF SLSPHELSSS QSHPERLIPS ADVSTGDCFG LSADSPSEQP LGITTLRQDV  60
PFDIMETFNR SNHQNQEWNM KSFDFKGSAS DLSMLVGSTG DRMNNHMEVE EPKLEDFLGS  120
HSSSGDYVFS DYNDVGSVAH SNSSIGLSMI KTWLRNQPVT QQVAEEKSGG GGGGLGESSS  180
SPERLVGGGS DGLSAVEAVA TRKSIDTFGQ RTSIYRGVTR HRWTGRYEAH LWDNSCRREG  240
QSRKGRQVYL GGYDKEDKAA RAYDLAALKY WGPTTTTNFP VSNYENELEE MKHMTRQEYV  300
ASLRRKSSGF SRGASIYRGV TRHHQHGRWQ ARIGRVAGNK DLYLGTFSTQ EEAAEAYDIA  360
AIKFRGLNAV TNFDMNRYDV KSILESSTLP IGGAAKRLKD TSEHSESIVI GSRRTNAMES  420
LASHYSGTIS ASSAGFGWPT IAFQQPQPQP QPLSIYYPNT NQRPWYKQEQ ETIAPAAATA  480
THNIHDLHHP NTHDFFQPST AAMNNFLSLQ DFATASLDHS TGSSTIVYSG FAGGSGGGFV  540
LPMSGHQGRG CFGEEQGKQS GVENYLGNSS YSSYQVGNQQ LPVGDVKAAA GYEQSGGFSG  600
WGLSVQATMA SRPGNVASVC HGAPLFSVWN DS
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes cell proliferation, differentiation and morphogenesis, especially during embryogenesis. {ECO:0000269|PubMed:12172019}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00610ChIP-seqTransfer from AT5G17430Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020700646.10.0AP2-like ethylene-responsive transcription factor BBM1
SwissprotQ6PQQ41e-149BBM_ARATH; AP2-like ethylene-responsive transcription factor BBM
TrEMBLA0A2I0WSF50.0A0A2I0WSF5_9ASPA; AP2-like ethylene-responsive transcription factor BBM2
STRINGXP_008804192.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP156937110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17430.11e-135AP2 family protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Horstman A,Willemsen V,Boutilier K,Heidstra R
    AINTEGUMENTA-LIKE proteins: hubs in a plethora of networks.
    Trends Plant Sci., 2014. 19(3): p. 146-57
    [PMID:24280109]
  3. Horstman A, et al.
    AIL and HDG proteins act antagonistically to control cell proliferation.
    Development, 2015. 142(3): p. 454-64
    [PMID:25564655]
  4. Florez SL,Erwin RL,Maximova SN,Guiltinan MJ,Curtis WR
    Enhanced somatic embryogenesis in Theobroma cacao using the homologous BABY BOOM transcription factor.
    BMC Plant Biol., 2015. 15: p. 121
    [PMID:25976599]
  5. Lutz KA,Martin C,Khairzada S,Maliga P
    Steroid-inducible BABY BOOM system for development of fertile Arabidopsis thaliana plants after prolonged tissue culture.
    Plant Cell Rep., 2015. 34(10): p. 1849-56
    [PMID:26156330]
  6. Horstman A, et al.
    The BABY BOOM Transcription Factor Activates the LEC1-ABI3-FUS3-LEC2 Network to Induce Somatic Embryogenesis.
    Plant Physiol., 2017. 175(2): p. 848-857
    [PMID:28830937]
  7. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]
  8. Horstman A,Bemer M,Boutilier K
    A transcriptional view on somatic embryogenesis.
    Regeneration (Oxf), 2017. 4(4): p. 201-216
    [PMID:29299323]