PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_39512
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family NF-X1
Protein Properties Length: 615aa    MW: 66971.9 Da    PI: 8.071
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_39512genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X116.91.4e-05265284120
    zf-NF-X1   1 CGkHkCqklCHeGpCppCpq 20 
                 CG+H C+++CH+G C++C++
  PEQU_39512 265 CGRHHCNQPCHTGSCGSCQE 284
                 ******************85 PP

2zf-NF-X122.23e-07485503119
    zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                 CG+H+Cq lCH G CppC 
  PEQU_39512 485 CGNHTCQLLCHSGHCPPCL 503
                 ******************6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF578505.3E-779150No hitNo description
PROSITE profilePS500168.68986146IPR019787Zinc finger, PHD-finger
PROSITE profilePS500899.40689144IPR001841Zinc finger, RING-type
PROSITE patternPS01359089143IPR019786Zinc finger, PHD-type, conserved site
SMARTSM004380.023210228IPR000967Zinc finger, NF-X1-type
PfamPF014224.3212227IPR000967Zinc finger, NF-X1-type
CDDcd060081.79E-9255303No hitNo description
SMARTSM004380.023265284IPR000967Zinc finger, NF-X1-type
PfamPF014220.0054265282IPR000967Zinc finger, NF-X1-type
CDDcd060082.95E-6319361No hitNo description
SMARTSM004380.12329348IPR000967Zinc finger, NF-X1-type
PfamPF014220.12329346IPR000967Zinc finger, NF-X1-type
CDDcd060086.49E-10377425No hitNo description
PfamPF014220.0051381405IPR000967Zinc finger, NF-X1-type
SMARTSM004380.014387406IPR000967Zinc finger, NF-X1-type
PfamPF014229.6445456IPR000967Zinc finger, NF-X1-type
CDDcd060083.37E-7475527No hitNo description
SMARTSM004383.3E-5485504IPR000967Zinc finger, NF-X1-type
PfamPF014223.2E-6485502IPR000967Zinc finger, NF-X1-type
SMARTSM004380.026542560IPR000967Zinc finger, NF-X1-type
PfamPF0142230542559IPR000967Zinc finger, NF-X1-type
SMARTSM004387.5595611IPR000967Zinc finger, NF-X1-type
PfamPF014220.0094595610IPR000967Zinc finger, NF-X1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009642Biological Processresponse to light intensity
GO:0009651Biological Processresponse to salt stress
GO:0009697Biological Processsalicylic acid biosynthetic process
GO:0010188Biological Processresponse to microbial phytotoxin
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042742Biological Processdefense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 615 aa     Download sequence    Send to blast
SDPKSPPSPS PSMSSSSTNR NGPRPRAAVS NRQEWVPRSS VPLNPPDRPQ TRPSRRSYAS  60
PSPANSDVTS VPQLVHEIQE KLSRGTVECM ICYDMVRRSA AMWSCPACFS IFHLHCIRKW  120
ARSPTSAADF TPASSGDWRC PGCQSPQSVP ASELVYTCFC GRRHDPPNDL YLTPHSCGEP  180
CGKPLDRAPL PPSDGRVNDV GDGEEGDFRC PHVCVLQCHP GPCPPCKAFA PRERCPCGKT  240
EIVRRCSERR APLSCGQQCN RLLTCGRHHC NQPCHTGSCG SCQELIIASC FCGKKTESVL  300
CGDMAVKGEF NGRNGLFSCN LPCDRSLSCG HHLCRENCHP GPCGDCELLP TKIKTCHCGK  360
MNLAGERKSC LDPIPTCSEV CGKPLVCKTH FCKIPCHEGN CPPCSVLVEQ RCRCGSSRQT  420
VECYKLFDET FTFICEKTCG RKKNCGRHRC SERCCPLSKT SSDQFSSGDW DPHFCSVPCG  480
KRLRCGNHTC QLLCHSGHCP PCLETIFTDL SCACGKTSIP PPIPCGTPTP SCRHLCLVPQ  540
PCGHPASHSC HFGDCPPCTI PMVKECIGGH VMLRNIPCGS KDIRCNQLCG KTRQCGIHAC  600
ARTCHPPPCD SSHAS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010907313.10.0PREDICTED: NF-X1-type zinc finger protein NFXL1-like
SwissprotQ9SY590.0NFXL1_ARATH; NF-X1-type zinc finger protein NFXL1
TrEMBLQ0DD610.0Q0DD61_ORYSJ; Os06g0252300 protein (Fragment)
TrEMBLA0A0E0PVW20.0A0A0E0PVW2_ORYRU; Uncharacterized protein
TrEMBLA0A0E0HNJ40.0A0A0E0HNJ4_ORYNI; Uncharacterized protein
STRINGVIT_17s0000g01920.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61303543
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10170.10.0NF-X-like 1