PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_37856
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family YABBY
Protein Properties Length: 155aa    MW: 17406.8 Da    PI: 8.059
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_37856genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY190.86.4e-5991506160
       YABBY   6 sseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsseklsen 104
                  +++vCyv+CnfC+t+lav++Ps+s++++vtvrCGhC++lls +++ ++ + + +++      +e++ ++k+e+ +++   ++e s  ++v++  +   
  PEQU_37856   9 LPDKVCYVHCNFCTTVLAVNIPSNSMSNIVTVRCGHCSNLLSADMRGMVLTDTQQNN------QEIQYDMKTEDLHVHLGSVSECSRASEVNT--FGVG 99 
                 689***************************************999998877777775......788999999888888777666555555555..5677 PP

       YABBY 105 edeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknW 160
                 +++ +p     +rPPekrqrvPsayn+fikeeiqrikasnPdishreafsaaakn 
  PEQU_37856 100 QQRILP-----NRPPEKRQRVPSAYNKFIKEEIQRIKASNPDISHREAFSAAAKNV 150
                 777777.....8*******************************************6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046901.4E-5810150IPR006780YABBY protein
SuperFamilySSF470951.57E-6101147IPR009071High mobility group box domain
CDDcd000845.27E-4114141No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 155 aa     Download sequence    Send to blast
MSIQVSELLP DKVCYVHCNF CTTVLAVNIP SNSMSNIVTV RCGHCSNLLS ADMRGMVLTD  60
TQQNNQEIQY DMKTEDLHVH LGSVSECSRA SEVNTFGVGQ QRILPNRPPE KRQRVPSAYN  120
KFIKEEIQRI KASNPDISHR EAFSAAAKNV SYKFC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008778120.14e-56PREDICTED: protein YABBY 2-like isoform X1
SwissprotQ10FZ78e-51YAB2_ORYSJ; Protein YABBY 2
TrEMBLM0TFM33e-53M0TFM3_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr7P07830_0018e-53(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP139437121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26580.25e-49YABBY family protein