PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_33912
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family bHLH
Protein Properties Length: 543aa    MW: 59741.8 Da    PI: 6.7982
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_33912genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.78.7e-13393439455
                 HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                 +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YI +Lq
  PEQU_33912 393 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAIAYITELQ 439
                 799***********************66......*****************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.3E-4834212IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.85389438IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.64E-18392451IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.63E-14392443No hitNo description
Gene3DG3DSA:4.10.280.102.3E-17393450IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.0E-10393439IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.4E-17395444IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 543 aa     Download sequence    Send to blast
MAIAVLGIQA FDYLTKSHLS SDGLITTVGG EANLQNKLVD LVEGPSGAVW SFAIFWQISR  60
SKSGDVVLGW GDGHLREPRE GEVAHEALPA AGQAAHQNMM KRVLQKLHLV YGGSDDENYA  120
LGLDRVTDAE MFFLASMYFA FPRGEGAPGR VLLSGNHLWA SANNYCVRAF LATAAGFQTI  180
VLVPFDTGVL ELGSVNAIKE SFEGLQMIRS LFSQGSTSHG GEKKVEKVQN SHFGFLGRSE  240
QSPMIFGKDL NIGRLEFSTG KIEDRQLEIH QSNNGLATYR KCLSWTQGRC FGSPQHKLGS  300
GAIIVGGSDQ HNGTKDERRL QFQPQKPPPP PPPTKQIDFS AVGGSVVARL GVLDAELSDA  360
EASCKEEKPS IIDERRPRKR GRKPANGREE PLNHVEAERQ RREKLNQRFY ALRAVVPNIS  420
KMDKASLLGD AIAYITELQK KVKEIDSEKD PCLIDRKNWT PDVDVQTSHE EVILSVSCPI  480
EAHPVSRIFQ ALKETRVSVL ESKVSAVDDD TILHTFVLKS PAGAEQMMKE ELMRAISQEM  540
SLS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4yz6_A5e-22312136193Transcription factor MYC3
4rs9_A5e-22312136193Transcription factor MYC3
4rqw_B5e-22312136193Transcription factor MYC3
4rqw_A5e-22312136193Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1374382RRPRKRGRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00100PBMTransfer from AT1G01260Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010912147.10.0PREDICTED: transcription factor bHLH13
TrEMBLA0A068UK621e-173A0A068UK62_COFCA; Uncharacterized protein
TrEMBLB9I8Z01e-173B9I8Z0_POPTR; Uncharacterized protein
STRINGPOPTR_0014s09520.11e-172(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51743860
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46510.11e-132ABA-inducible BHLH-type transcription factor