PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_32690
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family WRKY
Protein Properties Length: 99aa    MW: 11830.3 Da    PI: 9.9905
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_32690genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY93.91.2e-293188158
                ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
        WRKY  1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58
                ldDgy+WrKYG+K+vk+s +pr+YYrC+++gC+vkk++er +ed  +v++ Yeg Hnh
  PEQU_32690 31 LDDGYKWRKYGKKMVKSSSNPRNYYRCSMEGCNVKKRIERMEEDSGYVITSYEGIHNH 88
                59******************************************************** PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.9E-311689IPR003657WRKY domain
SuperFamilySSF1182909.81E-272489IPR003657WRKY domain
PROSITE profilePS5081127.62691IPR003657WRKY domain
SMARTSM007746.6E-313190IPR003657WRKY domain
PfamPF031062.2E-223288IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 99 aa     Download sequence    Send to blast
WMCRNTNMQQ SNQRLKKTKV SFKTKSDRDV LDDGYKWRKY GKKMVKSSSN PRNYYRCSME  60
GCNVKKRIER MEEDSGYVIT SYEGIHNHYA LNQHDYSGT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-232288874Probable WRKY transcription factor 4
2lex_A2e-232288874Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020598279.11e-65probable WRKY transcription factor 50
SwissprotQ8VWQ51e-32WRK50_ARATH; Probable WRKY transcription factor 50
TrEMBLA0A2P1JML15e-53A0A2P1JML1_9ASPA; WRKY transcription factor 50-like (Fragment)
STRINGTraes_3B_E408A7B56.12e-34(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44137206
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26170.16e-35WRKY DNA-binding protein 50
Publications ? help Back to Top
  1. Brand LH,Kirchler T,Hummel S,Chaban C,Wanke D
    DPI-ELISA: a fast and versatile method to specify the binding of plant transcription factors to DNA in vitro.
    Plant Methods, 2010. 6: p. 25
    [PMID:21108821]