PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_32685
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family WRKY
Protein Properties Length: 340aa    MW: 37667.7 Da    PI: 10.5331
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_32685genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY100.97.5e-32274331359
                 -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                 D+y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ edp+++++tYegeHnh+
  PEQU_32685 274 DEYSWRKYGQKPIKGSPHPRGYYKCSSMrGCPARKHVERCLEDPSMLIVTYEGEHNHN 331
                 9************************9988****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105335.1E-19225270IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.803.6E-34260332IPR003657WRKY domain
PROSITE profilePS5081130.159267333IPR003657WRKY domain
SuperFamilySSF1182902.09E-27270331IPR003657WRKY domain
SMARTSM007743.4E-39272332IPR003657WRKY domain
PfamPF031061.6E-27274330IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MEEVEAANRA AVESGHRLLS LLASKAEDEV QHRRNIVVET GEAVSRFRKL AALLGNGMGH  60
ARVKRAKPSA QLTPFNHQKL VLDSTLAAKA SPSTNLLPRT GDLDRKMFLE NKPLPQIHSA  120
PNPVQLASQF QYLHQHQQHQ QNQAFQLQQQ IKFQAEMLRR GNNGGINLKF DTPSCSQTIS  180
STTRSFLSSL SIDASGSVSG LDTKSFNLIG GPQSSEPSNL HPNSRRKCTG RGEDGSGKCS  240
SSGRCHCSKK RKLRVKRSIK VPAISNKLAD IPPDEYSWRK YGQKPIKGSP HPRGYYKCSS  300
MRGCPARKHV ERCLEDPSML IVTYEGEHNH NRLMSQSAQT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-20265331772WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ0812672e-78JQ081267.1 Gossypium hirsutum WRKY6 transcription factor (WRKY6) mRNA, complete cds.
GenBankKF2206422e-78KF220642.1 Gossypium hirsutum WRKY39-1 (WRKY39-1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020578068.10.0probable WRKY transcription factor 21
RefseqXP_020578069.10.0probable WRKY transcription factor 21
RefseqXP_020578070.10.0probable WRKY transcription factor 21
SwissprotQ93WU64e-97WRK74_ARATH; Probable WRKY transcription factor 74
TrEMBLA0A2I0VHP00.0A0A2I0VHP0_9ASPA; Putative WRKY transcription factor 74
STRINGXP_008805954.11e-144(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28593887
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28650.13e-77WRKY DNA-binding protein 74
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]