PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_31719
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family LBD
Protein Properties Length: 188aa    MW: 21395.8 Da    PI: 5.1107
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_31719genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260117.48.6e-3712109198
      DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 
                 +Ca+Ck+lrrkC +dC++apyf  e+++ f  vh++FGasn+ k+l +l++ +r+da+ slvyeA++   dP+yG+v+ i++lqq+l+q + el+++ 
  PEQU_31719  12 PCAGCKFLRRKCRPDCIFAPYFLPEEQQMFVLVHRVFGASNLAKILIDLHPRQRQDAVISLVYEARMYFIDPIYGCVRKISALQQELKQIQCELSYAL 109
                 7*********************99999******************************************************************99875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.41411112IPR004883Lateral organ boundaries, LOB
PfamPF031952.6E-3612107IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MAAGWGSLHS NPCAGCKFLR RKCRPDCIFA PYFLPEEQQM FVLVHRVFGA SNLAKILIDL  60
HPRQRQDAVI SLVYEARMYF IDPIYGCVRK ISALQQELKQ IQCELSYALA ELSRWESAIA  120
VLMKMEQETV IMMNGCDVSA LDGGVKTEVY DFGIVASKKI SKGEKEMGAF EREIDFAEDD  180
ELRSLLEW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-391211511114LOB family transfactor Ramosa2.1
5ly0_B1e-391211511114LOB family transfactor Ramosa2.1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPromotes the switch from proliferation to differentiation in the embryo sac. Negative regulator of cell proliferation in the adaxial side of leaves. Regulates the formation of a symmetric lamina and the establishment of venation. Interacts directly with RS2 (rough sheath 2) to repress some knox homeobox genes. {ECO:0000269|PubMed:17209126}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020703751.11e-100LOB domain-containing protein 12-like
RefseqXP_020703752.11e-100LOB domain-containing protein 12-like
SwissprotQ32SG32e-43LBD6_MAIZE; LOB domain-containing protein 6
TrEMBLA0A2I0WXE12e-99A0A2I0WXE1_9ASPA; LOB domain-containing protein 6
STRINGSi024114m2e-43(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22673895
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65620.44e-41LBD family protein