PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_28135
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family AP2
Protein Properties Length: 637aa    MW: 68459 Da    PI: 6.593
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_28135genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP246.87.5e-15222281155
         AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                 s y+GV++++++gr++A+++d  +   g  ++ ++++lg ++ +e+Aa+a++ a++k++g
  PEQU_28135 222 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqtRKgRQVYLGGYDKEEKAARAYDLAALKYWG 281
                 57*******************666664478446*************************98 PP

2AP246.97.1e-15324375155
         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  PEQU_28135 324 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 375
                 57****************988532...5************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.2E-11222281IPR001471AP2/ERF domain
SuperFamilySSF541712.94E-17222291IPR016177DNA-binding domain
CDDcd000184.66E-22222291No hitNo description
SMARTSM003802.0E-29223295IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-15223290IPR001471AP2/ERF domain
PROSITE profilePS5103219.164223289IPR001471AP2/ERF domain
PRINTSPR003673.1E-6224235IPR001471AP2/ERF domain
PfamPF008478.8E-10324375IPR001471AP2/ERF domain
CDDcd000182.80E-24324385No hitNo description
SuperFamilySSF541719.81E-18324385IPR016177DNA-binding domain
SMARTSM003801.5E-33325389IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.5E-18325384IPR001471AP2/ERF domain
PROSITE profilePS5103219.045325383IPR001471AP2/ERF domain
PRINTSPR003673.1E-6365385IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 637 aa     Download sequence    Send to blast
DWSMKSLDFK GSTSELSMIV DSSGGKCGNM DEVVVEEPKL EDFLGSGGSG GPPPFSDHEP  60
RIGSIVGDHY LYSNCSLQVP GVASTSGGGN GSIGLSMIKT WLRNQPTPSG SMMESKEEGE  120
DVGTTFIFNY KWKITITKIV VVRGRGGPSQ SLALSMSTGS QPTSALQLVA AEMAGGGDCG  180
GESLLLENEG KGGGSCGKVD VHSGVIEAVP RKSIDTFGQR TSIYRGVTRH RWTGRYEAHL  240
WDNSCRREGQ TRKGRQVYLG GYDKEEKAAR AYDLAALKYW GTTTTTNFPI SNYEKELEEM  300
KHMTRQEYVA SLRRKSSGFS RGASIYRGVT RHHQHGRWQA RIGRVAGNKD LYLGTFSTQE  360
EAAEAYDIAA IKFRGLNAVT NFDMSRYDVK SILESSTLPI GGAAKRLKDV GDHSESSIEG  420
QRSDDSGTSI VVASHIREAG LAGYPSHHYG WPAMAFQQQQ QQNIGLHYPY AAAVSQQRGW  480
CKPEPDVTLG HGVHDMQQEI HLGSTTHNFF QPSGIHSMVG MESSVEQSGG SSSSMLYGGS  540
GYVIPMGTMM IEGGQGGGGG GGNGGGYGDS EVKNSLGYEN LLGASDPYCG RNVYYSANMV  600
KETGYDQGDG WMVNSARQGG GISNCHGAPL FTLWNDA
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes cell proliferation, differentiation and morphogenesis, especially during embryogenesis. {ECO:0000269|PubMed:12172019}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC8368960.0KC836896.1 Erycina pusilla AP2-1 (AP2-1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020597745.10.0AP2-like ethylene-responsive transcription factor AIL1
SwissprotQ6PQQ41e-137BBM_ARATH; AP2-like ethylene-responsive transcription factor BBM
TrEMBLA0A2I0W5Z10.0A0A2I0W5Z1_9ASPA; AP2-like ethylene-responsive transcription factor BBM2
STRINGXP_008804192.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP156937110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17430.11e-129AP2 family protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Horstman A,Willemsen V,Boutilier K,Heidstra R
    AINTEGUMENTA-LIKE proteins: hubs in a plethora of networks.
    Trends Plant Sci., 2014. 19(3): p. 146-57
    [PMID:24280109]
  3. Horstman A, et al.
    AIL and HDG proteins act antagonistically to control cell proliferation.
    Development, 2015. 142(3): p. 454-64
    [PMID:25564655]
  4. Florez SL,Erwin RL,Maximova SN,Guiltinan MJ,Curtis WR
    Enhanced somatic embryogenesis in Theobroma cacao using the homologous BABY BOOM transcription factor.
    BMC Plant Biol., 2015. 15: p. 121
    [PMID:25976599]
  5. Lutz KA,Martin C,Khairzada S,Maliga P
    Steroid-inducible BABY BOOM system for development of fertile Arabidopsis thaliana plants after prolonged tissue culture.
    Plant Cell Rep., 2015. 34(10): p. 1849-56
    [PMID:26156330]
  6. Horstman A, et al.
    The BABY BOOM Transcription Factor Activates the LEC1-ABI3-FUS3-LEC2 Network to Induce Somatic Embryogenesis.
    Plant Physiol., 2017. 175(2): p. 848-857
    [PMID:28830937]
  7. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]
  8. Horstman A,Bemer M,Boutilier K
    A transcriptional view on somatic embryogenesis.
    Regeneration (Oxf), 2017. 4(4): p. 201-216
    [PMID:29299323]