PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_26523
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family CO-like
Protein Properties Length: 453aa    MW: 49942.2 Da    PI: 7.1838
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_26523genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box223.4e-071050337
    zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg.......H 37
                + +C+ ++e  + ++C+ +   lC  C  + H g       H
  PEQU_26523 10 PLVCDYCSEATAVIYCRADTARLCVACDRQVH-GanalswkH 50
                679***************************99.435566655 PP

2zf-B_box247.8e-085399342
    zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg.......Htvvpl 42
                 ++C+++++  ++  C   +  lC++C l  H+        H++vp+
  PEQU_26523 53 SQICDKCGDAAAIVRCSAEKLALCQECDLDVHSAvadtgdgHRRVPI 99
                689******99*********************779999999999997 PP

3CCT52.81.5e-18400445145
         CCT   1 ReaallRYkeKrktR.kFeKkirYesRKavAesRpRvKGrFvkqae 45 
                 R  a++RYkeK+ktR +++K+irYesRKa+A+ R RvKGrFvk++e
  PEQU_26523 400 RGTAMQRYKEKKKTRrQYDKRIRYESRKARADIRRRVKGRFVKSSE 445
                 6789*******998627**************************975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003362.8E-11855IPR000315B-box-type zinc finger
PROSITE profilePS501199.997855IPR000315B-box-type zinc finger
CDDcd000211.21E-51241No hitNo description
PROSITE profilePS501199.3855199IPR000315B-box-type zinc finger
PfamPF006432.5E-65399IPR000315B-box-type zinc finger
CDDcd000213.02E-75599No hitNo description
SMARTSM003360.195699IPR000315B-box-type zinc finger
PROSITE profilePS5101712.332400443IPR010402CCT domain
PfamPF062031.1E-13400443IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 453 aa     Download sequence    Send to blast
MGEGITDERP LVCDYCSEAT AVIYCRADTA RLCVACDRQV HGANALSWKH VRSQICDKCG  60
DAAAIVRCSA EKLALCQECD LDVHSAVADT GDGHRRVPIE GFSGFPSVVE LAASWGIELD  120
LKDSVECGEQ LMFAGLGTID SVFADLYVPC FSNGSRGGKR KPAVVQQLEE MARRDSSSEA  180
ASKLSPRTPC RSATGCGGGD EDCHSVQQLP FASLLMMAPS DCADLKENHR VVEEGDLIWG  240
FFINCLRTFQ IWDFNLGRSR EHNVSSPLDD GHAGNNSGFM IKSYSELLKE RTFTNTEILE  300
GFYEKNCPSS NEDVSSTNNI HHMPSSMLGK WKGKKGNSIL NGPSSSNNLP TISCPAVSSS  360
LNPGRGSISK EISFGEQPLV RTELVNSFKK VDTQLLAEKR GTAMQRYKEK KKTRRQYDKR  420
IRYESRKARA DIRRRVKGRF VKSSENVDDE NHG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008801132.11e-138PREDICTED: zinc finger protein CONSTANS-LIKE 13-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45042026
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33500.15e-70B-box type zinc finger protein with CCT domain