PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_25843
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family ERF
Protein Properties Length: 182aa    MW: 20124.4 Da    PI: 4.2899
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_25843genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.41.8e-18251356
         AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                y GVr+++ +gr++AeIrdp +   + r++lg+f+taeeAa a+++a+++l+g+
  PEQU_25843  2 YLGVRRRP-WGRYAAEIRDPAT---KERHWLGTFDTAEEAAVAYDRAARSLRGA 51
                88******.**********843...4*************************995 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103221.535158IPR001471AP2/ERF domain
CDDcd000184.07E-31159No hitNo description
SMARTSM003808.6E-33164IPR001471AP2/ERF domain
SuperFamilySSF541712.48E-21258IPR016177DNA-binding domain
PfamPF008471.0E-10250IPR001471AP2/ERF domain
PRINTSPR003677.9E-9213IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.9E-29258IPR001471AP2/ERF domain
PRINTSPR003677.9E-92440IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009739Biological Processresponse to gibberellin
GO:0010030Biological Processpositive regulation of seed germination
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
RYLGVRRRPW GRYAAEIRDP ATKERHWLGT FDTAEEAAVA YDRAARSLRG ASARTNFAYP  60
DLPPGSSLTP FLSPDLPSPH PFLIPPPPLL LPSTTILPSH QSLPPVIEEE IITPAPERVC  120
NGGGLELGEF NYSDTIGDEE DILSGQIYFD EEFLHSPLFG PMPEASEYIV EDFQLDGRSS  180
SS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-191571471Ethylene-responsive transcription factor ERF096
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00509DAPTransfer from AT5G13910Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020592760.11e-129ethylene-responsive transcription factor LEP-like
TrEMBLA0A2I0VNE43e-74A0A2I0VNE4_9ASPA; Ethylene-responsive transcription factor ERF087
STRINGGSMUA_Achr3P02360_0017e-57(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18853397
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13910.13e-25ERF family protein