PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_24048
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family YABBY
Protein Properties Length: 235aa    MW: 26395.5 Da    PI: 8.5926
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_24048genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY2374.3e-73181836170
       YABBY   6 sseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlks.nvekeesastsvsseklse 103
                  seq+Cyv+CnfC+t+lavsvP++slfk+vtvrCGhCt+llsvn++      a + hl++ +  +++++l  e  ++   n + ++   +++s    ++
  PEQU_24048  18 PSEQLCYVHCNFCDTVLAVSVPYSSLFKTVTVRCGHCTNLLSVNMRGLLLPSANQLHLGHPFLAPVQHNLLEEVLSCPPpNLMLDQPILSNNSIPPATK 116
                 68*****************************************99999999999999*********999999888876515555566666677777789 PP

       YABBY 104 nedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                   +ee+p+++ ++rPPekrqrvPsaynrfik+eiqrika+nPdi+hreafsaaaknWahfP+ihfgl
  PEQU_24048 117 VMEEELPQTQMANRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDITHREAFSAAAKNWAHFPHIHFGL 183
                 9999****999******************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046909.8E-7118183IPR006780YABBY protein
SuperFamilySSF470956.02E-8125176IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.102.8E-4132175IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009909Biological Processregulation of flower development
GO:0009933Biological Processmeristem structural organization
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010093Biological Processspecification of floral organ identity
GO:0010154Biological Processfruit development
GO:0010158Biological Processabaxial cell fate specification
GO:0010159Biological Processspecification of organ position
GO:0010450Biological Processinflorescence meristem growth
GO:1902183Biological Processregulation of shoot apical meristem development
GO:2000024Biological Processregulation of leaf development
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MSSSSAAAFS LEHLSPPPSE QLCYVHCNFC DTVLAVSVPY SSLFKTVTVR CGHCTNLLSV  60
NMRGLLLPSA NQLHLGHPFL APVQHNLLEE VLSCPPPNLM LDQPILSNNS IPPATKVMEE  120
ELPQTQMANR PPEKRQRVPS AYNRFIKDEI QRIKAGNPDI THREAFSAAA KNWAHFPHIH  180
FGLMPEQAMK KTTVRPPVIL LLFSLNSKSL QINPYFTQSH YYYKSGFQSL SLFPF
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in leaf cell growth and differentiation, rather than abaxial cell fate determination. {ECO:0000250}.
UniProtMay be involved in leaf cell growth and differentiation, rather than abaxial cell fate determination. {ECO:0000269|PubMed:17351053}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00620PBMTransfer from AT2G45190Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by WOX3. {ECO:0000269|PubMed:17351053}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020593943.11e-145protein YABBY 4-like
SwissprotQ01JG21e-78YAB5_ORYSI; Protein YABBY 5
SwissprotQ0JBF01e-78YAB5_ORYSJ; Protein YABBY 5
TrEMBLA0A2I0WTY51e-127A0A2I0WTY5_9ASPA; Protein YABBY 5
STRINGXP_008787013.11e-111(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP144538121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45190.15e-73YABBY family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Khanday I, et al.
    Genome-Wide Targets Regulated by the OsMADS1 Transcription Factor Reveals Its DNA Recognition Properties.
    Plant Physiol., 2016. 172(1): p. 372-88
    [PMID:27457124]