PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_22851
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family B3
Protein Properties Length: 122aa    MW: 13817.1 Da    PI: 9.4197
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_22851genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B350.53.8e-1610101197
                 EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvf 97 
                 f +v ++s v +  +lv+p  f ++  +    +++  l + +g++We+k+   + s+   l+ GWk+F+ +n+Lk+gD +vF+l+++ +e +l v+++
  PEQU_22851  10 FTSVVVKSQVEAPYQLVVPAWFRKSLPKA---TIQAYLVH-KGKTWEMKY--YGESRLKRLGCGWKKFALENNLKVGDGCVFELMDDdKELRLGVQIL 101
                 778899999999999****9998766433...34566655.9********..88888899***********************998778888888776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.1E-186101IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.24E-196100IPR015300DNA-binding pseudobarrel domain
CDDcd100179.53E-17898No hitNo description
PfamPF023624.0E-1410102IPR003340B3 DNA binding domain
PROSITE profilePS5086312.7610104IPR003340B3 DNA binding domain
SMARTSM010191.1E-410104IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 122 aa     Download sequence    Send to blast
STPLTGNPYF TSVVVKSQVE APYQLVVPAW FRKSLPKATI QAYLVHKGKT WEMKYYGESR  60
LKRLGCGWKK FALENNLKVG DGCVFELMDD DKELRLGVQI LNGQIPVEFI RLGSAEKPII  120
ID
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020582828.13e-87B3 domain-containing protein Os04g0386900-like
TrEMBLA0A2I0VBE28e-49A0A2I0VBE2_9ASPA; B3 domain-containing protein
STRINGXP_008802551.13e-40(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP89543545
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.13e-08B3 family protein