PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_22735
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family B3
Protein Properties Length: 97aa    MW: 11101 Da    PI: 11.5655
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_22735genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.61.7e-164911697
                EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE..EEEEE CS
          B3 16 lvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvvFkld.gr.sefelvvkvf 97
                l +p+ + ++    +k+ ++++++l+d +gr+W v+l ++k++++     +++GW +F++ ngL+ gD +vF+ + ++ ++fe ++kv+
  PEQU_22735  4 LNIPRAC-RKLfeISKEGKKRKVVLMDGEGRKWPVRLVHKKRRSGsvrSSISAGWLSFAHGNGLRRGDRCVFEPVlQSfESFESLIKVR 91
                5677665.44456344556779***************884444444668899*********************5557789999888876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010190.0033196IPR003340B3 DNA binding domain
CDDcd100171.18E-13194No hitNo description
PROSITE profilePS5086313.38196IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.6E-15280IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.47E-14377IPR015300DNA-binding pseudobarrel domain
PfamPF023624.1E-14591IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 97 aa     Download sequence    Send to blast
SSYLNIPRAC RKLFEISKEG KKRKVVLMDG EGRKWPVRLV HKKRRSGSVR SSISAGWLSF  60
AHGNGLRRGD RCVFEPVLQS FESFESLIKV RIIRGDV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028547826.12e-32B3 domain-containing protein REM9-like
TrEMBLA0A2I0XJ963e-31A0A2I0XJ96_9ASPA; B3 domain-containing protein REM1
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP47483264
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.11e-07B3 family protein