PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_20513
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family bHLH
Protein Properties Length: 549aa    MW: 59495.6 Da    PI: 6.787
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_20513genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH52.96.5e-17336382455
                 HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  hn  ErrRRdriN+++  L+el+P++     +K++Ka+ L +A+eY+k Lq
  PEQU_20513 336 VHNLSERRRRDRINEKMKALQELIPNC-----TKVDKASLLDEAIEYLKTLQ 382
                 6**************************.....9******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.102.7E-20330392IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.444332381IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.01E-20335402IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.92E-17335386No hitNo description
PfamPF000101.9E-14336382IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-17338387IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009704Biological Processde-etiolation
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010017Biological Processred or far-red light signaling pathway
GO:0031539Biological Processpositive regulation of anthocyanin metabolic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 549 aa     Download sequence    Send to blast
MQGQSNRTKK SSLGTEFAFD GRLEEKFGQN GGIDSAAHDL PSAVPSSMND QEEDAAPWLN  60
YAIDDSIQND YCSEFFSDLT GVHMPSLSDT NNKDSQIFRS SPGASDPCRS RFNSSVNMSQ  120
QCHNLSENIK PRVQDVDING GNSNRFGDLN STRFQKQDAC VQRALGQSNS AGLMNFPHFS  180
RAAALVKANV NGIDRLKSHE KSCTVSSTCT VDSTVVESRN GSESLNRAKV DDTEPVQNST  240
VVDRMGSSPN GQASNMAAER KEFEKGTETL VASSSVCSGY DAVATSNDPK HKSKKRARKG  300
EESGEESDNT EEELVAVKKP SSGRVSSGKR SRAAEVHNLS ERRRRDRINE KMKALQELIP  360
NCTKVDKASL LDEAIEYLKT LQLQVQLMSM GNGLFMTPMM FPAGMNLQHL RVPPISHLSP  420
LGVGMGMGMG MGMIGMNGSP GLIPVPPLMP VTQFSGPSVP GVARFHGIPP SSNIHSLGIP  480
RQSLPVLFPR ASLFNPQAGF SPQNPLKVSD KDPSSSNNQQ QQCINLEDIE NAATKEPKGQ  540
VLQVLLDHL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1340345ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00081ChIP-seqTransfer from AT1G09530Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020576907.10.0transcription factor PIF3-like isoform X2
TrEMBLA0A2I0VBU70.0A0A2I0VBU7_9ASPA; Transcription factor PIF3
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35273775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.26e-37phytochrome interacting factor 3