PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_19547
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family TCP
Protein Properties Length: 372aa    MW: 40543.5 Da    PI: 9.3253
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_19547genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP103.34.1e-32421763114
         TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..........................ssssasecea 75 
                 g+kdrhsk+ T +g+RdRRvRls+++a++f+d+qd+LG+d++sk++eWL+++a  +i++l+++                           s+s+s c++
  PEQU_19547  42 GGKDRHSKVWTVKGLRDRRVRLSVSTAIQFYDIQDRLGYDQPSKAVEWLIKAAADSIIDLPELvgpfpvpppvevparsmqtgaageqhFSQSKSTCSS 140
                 78***************************************************************9988888877776665544333321111122222 PP

         TCP  76 esssssasnsssg......kaaksaakskksqksaasalnlakes 114
                 +s+                +++ +   ++k+++   +++nl+k+s
  PEQU_19547 141 ASE---------MskgsvlSSRFEGIGKEKDEDLIYQHQNLSKQS 176
                 222.........022244333333335555555555555555544 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.9E-3242172IPR005333Transcription factor, TCP
PROSITE profilePS5136930.12243101IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MKTEGIHSSK RLGRDKDGEG VGDVSPWQNA SSRIIRVSRV SGGKDRHSKV WTVKGLRDRR  60
VRLSVSTAIQ FYDIQDRLGY DQPSKAVEWL IKAAADSIID LPELVGPFPV PPPVEVPARS  120
MQTGAAGEQH FSQSKSTCSS ASEMSKGSVL SSRFEGIGKE KDEDLIYQHQ NLSKQSSFTV  180
LLKVGGSSNG SAAVAEVVDF SSGFKKKQMR PPLTNSYADY FRQVGIFGES PKIQQFEPGH  240
SSVLHFGSNP HMGIGMVTCN TGEHHDLKQF SFMQDHAIPV SALAPRGDYN LNVSISSGFT  300
GFSRGTLQSN SPYHCQLIHG SNLPCFLGNT LPISAAAGGS LENHFPGSFN ARLQFFPNEA  360
HWHPELKGKR QG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A1e-2348102155Putative transcription factor PCF6
5zkt_B1e-2348102155Putative transcription factor PCF6
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ4396030.0HQ439603.1 Phalaenopsis hybrid cultivar candidate developmental transcription factor TCP1 mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020580520.10.0transcription factor TCP2-like
RefseqXP_020580521.10.0transcription factor TCP2-like
RefseqXP_020580522.10.0transcription factor TCP2-like
RefseqXP_020580523.10.0transcription factor TCP2-like
TrEMBLA0A1D6ZNH70.0A0A1D6ZNH7_PHAEQ; TCP transcription factor
STRINGXP_008784856.11e-91(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30943271
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18390.22e-36TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2