PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_19038
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family LBD
Protein Properties Length: 188aa    MW: 20867 Da    PI: 4.9006
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_19038genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26093.32.9e-292103197
      DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                 +C++C+vlr++C+++C+l+ ++     p++q +++ +v+k+FG++ ++ +l+++pee+r+++++sl++e++ r  +Pv+Gavg+i++ +++l+ +++e+
  PEQU_19038   2 SCNGCRVLRKGCSESCILRSCLqwiesPEAQGHATVFVAKFFGRAGLMAFLSSVPEENRPALFQSLLFESCGRSINPVSGAVGLIWTRKWNLCLEAVET 100
                 6*********************************************************************************************99998 PP

      DUF260  95 all 97 
                 +l+
  PEQU_19038 101 VLR 103
                 876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089118.231107IPR004883Lateral organ boundaries, LOB
PfamPF031951.5E-242100IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSESCILR SCLQWIESPE AQGHATVFVA KFFGRAGLMA FLSSVPEENR  60
PALFQSLLFE SCGRSINPVS GAVGLIWTRK WNLCLEAVET VLRGGTIRPI SELPEVRAAD  120
DEEVYGMWPK SPLIGNLLSH VKCDLELYLR LPVTEEKEMP GTPSMNSSTT GDEDNCIDRE  180
QRVLNLFV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020593604.11e-137LOB domain-containing protein 39-like
SwissprotQ9SZE83e-65LBD39_ARATH; LOB domain-containing protein 39
TrEMBLA0A2I0V7T91e-100A0A2I0V7T9_9ASPA; LOB domain-containing protein 39
STRINGXP_008800648.11e-70(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40843675
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37540.11e-67LOB domain-containing protein 39