PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_17906
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family YABBY
Protein Properties Length: 228aa    MW: 25592.4 Da    PI: 9.2769
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_17906genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY221.42.6e-68191906170
       YABBY   6 sseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesas.tsvsseklse 103
                  +e++Cyv+CnfC+t+lavsvP++slfk+v+vrCGhC++llsv+++      +++ hl++ ++ +++++l  + ++++s++ +++ +  +++ +  l +
  PEQU_17906  19 PTEKLCYVHCNFCDTVLAVSVPYSSLFKTVAVRCGHCSNLLSVSMRGLLLPATSQLHLGHPFQSPVQHNLLEDVQSYQSQNLMDNLPFlSNNLMPPLAK 117
                 689***************************************99999999999999**********999999999999888777766514455666766 PP

       YABBY 104 nedeevprvppvir......PPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                  ++ee+p+   ++r       PekrqrvPsaynrfik+eiqrika+nPdi+hreafsaaaknWahfP+ih gl
  PEQU_17906 118 VTEEELPQNSVTNRrkflssSPEKRQRVPSAYNRFIKDEIQRIKAGNPDITHREAFSAAAKNWAHFPHIHLGL 190
                 666666655544442333338*************************************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046906.3E-6719190IPR006780YABBY protein
SuperFamilySSF470956.02E-8128183IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.103.3E-4139182IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
SKMSSTPSPF SLEQISPPPT EKLCYVHCNF CDTVLAVSVP YSSLFKTVAV RCGHCSNLLS  60
VSMRGLLLPA TSQLHLGHPF QSPVQHNLLE DVQSYQSQNL MDNLPFLSNN LMPPLAKVTE  120
EELPQNSVTN RRKFLSSSPE KRQRVPSAYN RFIKDEIQRI KAGNPDITHR EAFSAAAKNW  180
AHFPHIHLGL MPDQAIKKAT VHPPVMLGNQ FFLFSFKDIT SVSFNKSF
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in leaf cell growth and differentiation, rather than abaxial cell fate determination. {ECO:0000250}.
UniProtMay be involved in leaf cell growth and differentiation, rather than abaxial cell fate determination. {ECO:0000269|PubMed:17351053}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by WOX3. {ECO:0000269|PubMed:17351053}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020592546.11e-150protein YABBY 4-like isoform X1
SwissprotQ01JG22e-72YAB5_ORYSI; Protein YABBY 5
SwissprotQ0JBF02e-72YAB5_ORYSJ; Protein YABBY 5
TrEMBLA0A2I0W7A51e-107A0A2I0W7A5_9ASPA; Axial regulator YABBY 1
STRINGGSMUA_Achr8P11580_0013e-92(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP144538121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00180.12e-64YABBY family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Khanday I, et al.
    Genome-Wide Targets Regulated by the OsMADS1 Transcription Factor Reveals Its DNA Recognition Properties.
    Plant Physiol., 2016. 172(1): p. 372-88
    [PMID:27457124]