PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_16251
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family CPP
Protein Properties Length: 482aa    MW: 53055.7 Da    PI: 7.4261
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_16251genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR41.23.3e-132260241
         TCR  2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41
                +kk+CnCk+s+Clk+YCeCfa+g++C+  C+C +C+N+ e
  PEQU_16251 22 RKKNCNCKHSRCLKLYCECFASGVHCDG-CNCANCCNNGE 60
                689*************************.********977 PP

2TCR506e-16106145140
         TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                 k++kgC+Ckks ClkkYCeC++a+  Cse+CkC dCkN e
  PEQU_16251 106 KHNKGCHCKKSGCLKKYCECYQANILCSENCKCIDCKNFE 145
                 589***********************************65 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011142.4E-102161IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163436.29222146IPR005172CRC domain
PfamPF036381.5E-92358IPR005172CRC domain
SMARTSM011146.0E-20106147IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.3E-12109144IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 482 aa     Download sequence    Send to blast
KPESPKGRSR PLFEMKEGTP TRKKNCNCKH SRCLKLYCEC FASGVHCDGC NCANCCNNGE  60
NEATRRDAIE ATLERNPNAF RPKIGNSPHS IRDSKEDVVE TTLVGKHNKG CHCKKSGCLK  120
KYCECYQANI LCSENCKCID CKNFEGSEER KAYHHGDHGN AFNFMQQAAH AALNGAIGPS  180
GYNSPVSKKR KNHDLFFNTS SKDQSIHVGH VKTSEPSSVA SVPAGRSANP APLGSAKATY  240
RPLLADIVHN EDVKELCRIL AVVSAEVVKT AAGKCVREEK HPEMEEQVES SHPDRRSDDK  300
IETLVRSDLQ KISVDDRLSG THADEITEES DFADGQRSTR PMSPETLALM CDEQDMMCLS  360
SHNNDMVPAL PNNQRMTEVY AEQEKCVLMA FRESLLKLIN CGTAKEVKFS STSSKAEASS  420
HGDALPNSIS RIPAPVNSQL FQTVNTLPSS SNSHFPLTAL NQTVENGPLK PKVENTEILK  480
FK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A2e-30141552132Protein lin-54 homolog
5fd3_B2e-30141552132Protein lin-54 homolog
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00045PBMTransfer from AT4G29000Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020571126.10.0protein tesmin/TSO1-like CXC 5
SwissprotQ9SZD11e-135TCX5_ARATH; Protein tesmin/TSO1-like CXC 5
TrEMBLA0A2I0X8I70.0A0A2I0X8I7_9ASPA; Protein tesmin/TSO1-like CXC 5
STRINGXP_008789327.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP47303657
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.11e-125Tesmin/TSO1-like CXC domain-containing protein