PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_15800
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family AP2
Protein Properties Length: 283aa    MW: 32303.8 Da    PI: 7.0166
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_15800genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP245.91.4e-141878156
         AP2  1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkklege 56
                s y+GV++++++gr++A+++d  s+n    k+ k+++lg +  ++ Aa+a++ a++k++g+
  PEQU_15800 18 SVYRGVTRHRWTGRYEAHLWDkNSWNEsqkKKgKQVYLGAYYDEDAAARAYDLAALKYWGH 78
                78*******************888877776447******999999*************997 PP

2AP251.23.1e-16120171155
         AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 s+y+GV +++ +grW+A+I       g +k+ +lg++ t eeAa a++ a+ +++g
  PEQU_15800 120 SKYRGVARHHHNGRWEARIGRvH---G-NKYLYLGTYATQEEAATAYDMAAIEYRG 171
                 89****99**********98833...3.5*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.03E-161887IPR016177DNA-binding domain
PfamPF008473.9E-111878IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-151986IPR001471AP2/ERF domain
PROSITE profilePS5103219.5461985IPR001471AP2/ERF domain
SMARTSM003802.9E-231991IPR001471AP2/ERF domain
PRINTSPR003672.8E-62031IPR001471AP2/ERF domain
CDDcd000181.51E-22120181No hitNo description
PfamPF008475.1E-12120171IPR001471AP2/ERF domain
SuperFamilySSF541716.34E-18120181IPR016177DNA-binding domain
PROSITE profilePS5103218.321121179IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-18121180IPR001471AP2/ERF domain
SMARTSM003803.6E-25121185IPR001471AP2/ERF domain
PRINTSPR003672.8E-6161181IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0010187Biological Processnegative regulation of seed germination
GO:0040008Biological Processregulation of growth
GO:0045723Biological Processpositive regulation of fatty acid biosynthetic process
GO:1901959Biological Processpositive regulation of cutin biosynthetic process
GO:0000981Molecular FunctionRNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
EDKEERSVPR DSPLQRSSVY RGVTRHRWTG RYEAHLWDKN SWNESQKKKG KQVYLGAYYD  60
EDAAARAYDL AALKYWGHET ILNFPLSTYQ EELRDMQGQS KEEYIGSLRR KSSGFSRGVS  120
KYRGVARHHH NGRWEARIGR VHGNKYLYLG TYATQEEAAT AYDMAAIEYR GLNAVTNFDL  180
SHYRALINTN TMTNAAATNI STLGLILQSS KFKQMLERTA MFDASSVPNE FVGEQWPRCS  240
FPDDIQTYFG CHDNGGFNVE GDGTLFGELN AFEPPVFQCG LDL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011020562.11e-140PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060 isoform X1
SwissprotQ94AN41e-109AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLM5XNZ81e-133M5XNZ8_PRUPE; Uncharacterized protein
STRINGPOPTR_0003s18350.11e-132(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33193678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79700.21e-98AP2 family protein