PlantTFDB
Plant Transcription Factor Database
PlantRegMap/PlantTFDB v5.0
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_15655
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family B3
Protein Properties Length: 122aa    MW: 13957.4 Da    PI: 8.6425
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_15655genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.86.3e-1611103199
                 EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                 f++++ +s+v    +lv+p +f ++  + + ++    +   +g+ We+++  ++      ++ GW++Fv++n+L++gD +vF+l++++e +++v++++ 
  PEQU_15655  11 FISIMAKSHVQLPYQLVVPTSFRDALPSATVKG----VLACRGKIWEIRY--CGDCTLKRFGVGWRKFVEDNELRVGDGCVFELMDDKELRFRVQILDG 103
                 778899999999999*******87776554454....55679********..777777779************************99********9985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.8E-208102IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.43E-178101IPR015300DNA-binding pseudobarrel domain
CDDcd100173.90E-179102No hitNo description
PROSITE profilePS5086312.95711104IPR003340B3 DNA binding domain
SMARTSM010199.5E-611104IPR003340B3 DNA binding domain
PfamPF023621.4E-1311103IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 122 aa     Download sequence    Send to blast
EILPLLGNPY FISIMAKSHV QLPYQLVVPT SFRDALPSAT VKGVLACRGK IWEIRYCGDC  60
TLKRFGVGWR KFVEDNELRV GDGCVFELMD DKELRFRVQI LDGQIPTKIF KRGSLERPIN  120
ID
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020572392.11e-86B3 domain-containing protein Os04g0386900-like
SwissprotQ7XLP45e-35Y4869_ORYSJ; B3 domain-containing protein Os04g0386900
TrEMBLA0A2I0WYG83e-68A0A2I0WYG8_9ASPA; B3 domain-containing protein
STRINGXP_008776698.12e-38(Phoenix dactylifera)
STRINGXP_008802551.13e-38(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP89543545
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58280.18e-09B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]