PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_15646
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family LBD
Protein Properties Length: 238aa    MW: 25189.3 Da    PI: 7.896
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_15646genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601284.2e-40271271100
      DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 
                 +C aCk+lrrkC+++C++apyf ++q +++fa+vhk+FGasnv+kll ++p ++r+da+ ++++eA+ r+rdPvyG+v++i++lqqq+ +l+ael++l+
  PEQU_15646  27 PCGACKFLRRKCVSGCIFAPYFDSDQgAAHFAAVHKVFGASNVSKLLLHIPAHKRPDAVVTICFEAQSRLRDPVYGCVAHIFALQQQVVSLQAELSYLQ 125
                 7***********************9989********************************************************************999 PP

      DUF260  99 ee 100
                 ++
  PEQU_15646 126 SH 127
                 86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.86626128IPR004883Lateral organ boundaries, LOB
PfamPF031954.5E-3927125IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010089Biological Processxylem development
GO:0010199Biological Processorgan boundary specification between lateral organs and the meristem
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MSTGSTSSSG GAGGSGGGSG VGGGGGPCGA CKFLRRKCVS GCIFAPYFDS DQGAAHFAAV  60
HKVFGASNVS KLLLHIPAHK RPDAVVTICF EAQSRLRDPV YGCVAHIFAL QQQVVSLQAE  120
LSYLQSHLAT LELPTPPPLP PPPLPQANAF SMPELLSSSN LPSHSNLDLS WLFDPQFQMQ  180
QQNRPAELRQ PQQLERSGER QVGESSGSHG GGDLQALARE LIERHRSSSS DHSSKLPK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A8e-37231287111LOB family transfactor Ramosa2.1
5ly0_B8e-37231287111LOB family transfactor Ramosa2.1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the positive regulation of tracheary element (TE) differentiation. Involved in a positive feedback loop that maintains or promotes NAC030/VND7 expression that regulates TE differentiation-related genes. {ECO:0000269|PubMed:19088331}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020572426.11e-172LOB domain-containing protein 30-like
SwissprotO813234e-70LBD30_ARATH; LOB domain-containing protein 30
TrEMBLA0A2I0VRW69e-91A0A2I0VRW6_9ASPA; LOB domain-containing protein 30
STRINGGSMUA_Achr5P11330_0011e-84(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33463782
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00220.16e-66LBD family protein
Publications ? help Back to Top
  1. Rast-Somssich MI, et al.
    The Arabidopsis JAGGED LATERAL ORGANS (JLO) gene sensitizes plants to auxin.
    J. Exp. Bot., 2017. 68(11): p. 2741-2755
    [PMID:28472464]
  2. Liu C,Yu H,Li L
    SUMO modification of LBD30 by SIZ1 regulates secondary cell wall formation in Arabidopsis thaliana.
    PLoS Genet., 2019. 15(1): p. e1007928
    [PMID:30657769]