PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_15634
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family TCP
Protein Properties Length: 301aa    MW: 31308.6 Da    PI: 9.6768
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_15634genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP112.55.8e-3562141686
         TCP   6 drhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnss 86 
                 +r++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d+ ti WLlq a+pai+++tgt++ +a ++  +++ +  ++   
  PEQU_15634  62 RRTKDRHTKVEGRGRRIRIPATCAARIFQLTRELGHKSDGDTIRWLLQHAEPAIIAATGTGTVPAIATnVNGTLKIPTQ--A 141
                 69**********************************************************8888844421222222222..1 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036345.3E-2963140IPR005333Transcription factor, TCP
PROSITE profilePS5136925.96464118IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MDFQTPNKED APTWIADPGE TTAGGQAAAF SSSSSIRNRL IMPKPESLDT IAPLPIIPHP  60
LRRTKDRHTK VEGRGRRIRI PATCAARIFQ LTRELGHKSD GDTIRWLLQH AEPAIIAATG  120
TGTVPAIATN VNGTLKIPTQ ASNPAPSVTS AADVTKRRRK LQPTRAVAGG GVIGYFQGAD  180
LVIPSGGAIS ISAGLAPVAA SRVVPMWTTV SGAAAISPAA GWEMFPSSAA TSSQGHILTF  240
PIGLSATGVN FAAARPVLAA AGAAISEAVG GKEELELMKE SVDADEFEEQ RGKVKPLSET  300
D
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3', especially at sites IIa (5'-GGGCCCAC-3') and IIb (5'-GGTCCCAC-3') (essential for meristematic tissue-specificity expression) of the PCNA gene promoter. {ECO:0000269|PubMed:12000681}.
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3', especially at sites IIa (5'-GGGCCCAC-3') and IIb (5'-GGTCCCAC-3') (essential for meristematic tissue-specificity expression) of the PCNA gene promoter. {ECO:0000269|PubMed:12000681, ECO:0000269|PubMed:9338963}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00635PBMTransfer from PK14653.1Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ4396060.0HQ439606.1 Phalaenopsis hybrid cultivar candidate developmental transcription factor TCP4 mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020572411.10.0transcription factor PCF2-like
SwissprotA2YXQ16e-53PCF2_ORYSI; Transcription factor PCF2
SwissprotQ6ZBH66e-53PCF2_ORYSJ; Transcription factor PCF2
TrEMBLA0A1D6ZNF00.0A0A1D6ZNF0_PHAEQ; TCP transcription factor
STRINGXP_008776516.11e-81(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39123167
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45680.11e-47TCP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]