PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_15396
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family WRKY
Protein Properties Length: 237aa    MW: 25127 Da    PI: 7.4218
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_15396genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY87.11.6e-273991859
                EEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY  8 rKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59
                rKYGqK++kgs++pr+YYrC+s+ gCp++k+vers+ dp+++++tY++eHnh+
  PEQU_15396 39 RKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSRADPTMFIVTYTSEHNHP 91
                9********************998****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081129.3563993IPR003657WRKY domain
SuperFamilySSF1182905.89E-233993IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.4E-273993IPR003657WRKY domain
SMARTSM007741.4E-303992IPR003657WRKY domain
PfamPF031062.0E-233991IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
SRRSVQKRVV SLPVPEFEGV PRLKTGGGGG GGGARPGGRK YGQKPIKGSP YPRGYYRCSS  60
SKGCPARKQV ERSRADPTMF IVTYTSEHNH PWPPVHKKTK TAEDPKPVET SPAEPASDPE  120
EIFSDLIGEE PSMLIHDHFR WPSNSSAAAD DDGGPLYGPP VSGRSDECDK LGGRGSVAAV  180
DEEEDALFAG LGELPEYSVI FRRGYVDRQV CGGEEGKRCG LKATAAAPAA AACGSTG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B1e-1639932379Disease resistance protein RRS1
5w3x_D1e-1639932379Disease resistance protein RRS1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020575074.11e-142probable WRKY transcription factor 65
SwissprotQ9LP562e-41WRK65_ARATH; Probable WRKY transcription factor 65
TrEMBLA0A2R4LUZ41e-128A0A2R4LUZ4_CYMEN; Putative WRKY transcription factor 65
STRINGXP_008792327.12e-56(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP109473341
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29280.11e-38WRKY DNA-binding protein 65
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Singh V,Roy S,Singh D,Nandi AK
    Arabidopsis flowering locus D influences systemic-acquired-resistance- induced expression and histone modifications of WRKY genes.
    J. Biosci., 2014. 39(1): p. 119-26
    [PMID:24499796]