PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_14840
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family YABBY
Protein Properties Length: 183aa    MW: 20293.9 Da    PI: 8.3116
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_14840genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY190.96.2e-5921572170
       YABBY   2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvssek 100
                 ++  ss++vCyv+CnfCntil+vsvP   + +++tvrCGhC++llsvn+  + q ++a   ld +      ++ + ++ +l+   +++ ++ +     +
  PEQU_14840   2 STSASSNHVCYVHCNFCNTILVVSVPGINMCSIMTVRCGHCSNLLSVNMGGFLQSVPAGF-LDLQ-----GHNVGPDGLHLERESSSRCNKISLFD--S 92 
                 567899**********************************************99999976.4443.....44555555555554444444444433..4 PP

       YABBY 101 lsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                 + +n+ +++p      +  ekrqrvPsaynrfikeei+r+k++nPdishreafsaaaknWahfP+ihf l
  PEQU_14840  93 MGNNQPDKIPT-----HVSEKRQRVPSAYNRFIKEEIRRLKTTNPDISHREAFSAAAKNWAHFPHIHFSL 157
                 77888888884.....567*************************************************75 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046905.0E-646157IPR006780YABBY protein
SuperFamilySSF470951.44E-798150IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.104.7E-5106151IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
GO:0010158Biological Processabaxial cell fate specification
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MSTSASSNHV CYVHCNFCNT ILVVSVPGIN MCSIMTVRCG HCSNLLSVNM GGFLQSVPAG  60
FLDLQGHNVG PDGLHLERES SSRCNKISLF DSMGNNQPDK IPTHVSEKRQ RVPSAYNRFI  120
KEEIRRLKTT NPDISHREAF SAAAKNWAHF PHIHFSLNHG ANKHVKIDDP IASQGSQDSQ  180
SYY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020574278.11e-136protein YABBY 2-like isoform X2
SwissprotQ10FZ75e-58YAB2_ORYSJ; Protein YABBY 2
TrEMBLA0A2I0XF831e-82A0A2I0XF83_9ASPA; Axial regulator YABBY 2
STRINGXP_008778120.16e-80(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP139437121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08465.12e-58YABBY family protein