PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_13315
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family TCP
Protein Properties Length: 220aa    MW: 24505.2 Da    PI: 6.6801
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_13315genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP115.95.1e-36131432108
         TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...................ssssasec.eaessss 80 
                 +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak ai+el                      +++++s+   + s +s
  PEQU_13315  13 TGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKNAKSAIDELGPAsirnpvpaaedsgsasftfDAPPNSSQdLHLSLQS 111
                 79************************************************************9978877777665544444433333322222222222 PP

         TCP  81 sasnsssg............kaaksaakskksqksaasal 108
                        +            ++++s   s+++q+ a+  +
  PEQU_13315 112 F------QddifsnqnpvffDNCNSVGLSEQNQRMAS--R 143
                 2......022233344566655555555444444444..3 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036347.9E-3313115IPR005333Transcription factor, TCP
PROSITE profilePS5136933.9781573IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MKSSGEILEV RSTGRKDRHS KVCTAKGPRD RRVRLSAHTA IQFYDVQDRL GYDRPSKAVD  60
WLIKNAKSAI DELGPASIRN PVPAAEDSGS ASFTFDAPPN SSQDLHLSLQ SFQDDIFSNQ  120
NPVFFDNCNS VGLSEQNQRM ASRNAMVFSP AQIFAQREPL QSSNLPLFRP WMETMDQEML  180
NPSSSSVGFS GFRIPARIQG EEELDSMSHT LSSRSSSSYH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A2e-202073154Putative transcription factor PCF6
5zkt_B2e-202073154Putative transcription factor PCF6
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020576817.11e-162transcription factor PCF5-like
TrEMBLA0A1D6ZNH21e-161A0A1D6ZNH2_PHAEQ; TCP transcription factor
STRINGGSMUA_Achr8P19990_0013e-55(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP120562330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15030.35e-39TCP family protein