PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_13090
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family LBD
Protein Properties Length: 102aa    MW: 11110 Da    PI: 9.3391
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_13090genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260116.31.9e-36492188
      DUF260  1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88
                +C aCk+lrrkCa+ C++ap+f  eq +++f ++hk+FGasnv+kll++lpe++r +a+ +++yeA ar+rdPvyG+v+++ +lqqq++
  PEQU_13090  4 SCGACKFLRRKCADMCIFAPHFSYEQaAAHFSAIHKVFGASNVSKLLSHLPEQHRAAAAITVAYEALARVRDPVYGCVAHVIALQQQVS 92
                6***********************9978***********************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089121.443102IPR004883Lateral organ boundaries, LOB
PfamPF031951.3E-34492IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 102 aa     Download sequence    Send to blast
MASSCGACKF LRRKCADMCI FAPHFSYEQA AAHFSAIHKV FGASNVSKLL SHLPEQHRAA  60
AAITVAYEAL ARVRDPVYGC VAHVIALQQQ VSFKLGATKL IY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A5e-31291997LOB family transfactor Ramosa2.1
5ly0_B5e-31291997LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. {ECO:0000269|PubMed:17259263}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020590174.12e-60LOB domain-containing protein 33-like
SwissprotQ9LHS82e-45LBD33_ARATH; LOB domain-containing protein 33
TrEMBLA0A2I0AA919e-54A0A2I0AA91_9ASPA; LOB domain-containing protein 33
STRINGXP_010543775.19e-48(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33463782
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06080.19e-48LOB domain-containing protein 33
Publications ? help Back to Top
  1. Bargmann BO,Birnbaum KD,Brenner ED
    An undergraduate study of two transcription factors that promote lateral root formation.
    Biochem Mol Biol Educ, 2014 May-Jun. 42(3): p. 237-45
    [PMID:24615800]