PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_11845
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family WRKY
Protein Properties Length: 145aa    MW: 16405.4 Da    PI: 9.7653
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_11845genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY107.37.6e-341067259
                --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY  2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59
                +Dgy+WrKYGqK vk+s++prsYYrCt+++C+vkk+vers++dp++v++tYeg+H+h+
  PEQU_11845 10 EDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCTVKKRVERSNQDPSIVITTYEGQHTHH 67
                8********************************************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.7E-33269IPR003657WRKY domain
SuperFamilySSF1182901.24E-29369IPR003657WRKY domain
PROSITE profilePS5081131.663469IPR003657WRKY domain
SMARTSM007744.2E-39968IPR003657WRKY domain
PfamPF031063.7E-271067IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 145 aa     Download sequence    Send to blast
MTKSEVDHLE DGYRWRKYGQ KAVKNSPYPR SYYRCTTQKC TVKKRVERSN QDPSIVITTY  60
EGQHTHHCPA NVRGSSHLLA NQTSSMAMQS FRTELFGQQL SQLGSTSSGY GFLQTLSSPS  120
QQLQIPNYGA LLQDIMPSFI KSSHP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-302701078Probable WRKY transcription factor 4
2lex_A2e-302701078Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00440DAPTransfer from AT4G18170Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020583702.11e-105probable WRKY transcription factor 28 isoform X1
RefseqXP_020583703.11e-105probable WRKY transcription factor 28 isoform X2
RefseqXP_020583704.11e-105probable WRKY transcription factor 28 isoform X3
SwissprotQ8VWJ21e-45WRK28_ARATH; WRKY transcription factor 28
TrEMBLA0A2P1JMM23e-93A0A2P1JMM2_9ASPA; WRKY transcription factor 71-like (Fragment)
STRINGXP_008777186.14e-58(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62337173
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29860.17e-45WRKY DNA-binding protein 71
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Kim SH, et al.
    Characterization of a Novel DWD protein that participates in heat stress response in Arabidopsis.
    Mol. Cells, 2014. 37(11): p. 833-40
    [PMID:25358503]
  4. Zhao L, et al.
    KLU suppresses megasporocyte cell fate through SWR1-mediated activation of WRKY28 expression in Arabidopsis.
    Proc. Natl. Acad. Sci. U.S.A., 2018. 115(3): p. E526-E535
    [PMID:29288215]