PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_09751
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family TCP
Protein Properties Length: 253aa    MW: 26846.3 Da    PI: 5.769
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_09751genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP117.41.8e-3644124692
         TCP   6 drhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssgkaak 92 
                 +r++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++ti WLlqqa++ai ++tgt++++a ++ +++        +++ +a+
  PEQU_09751  44 KRTKDRHTKVEGRGRRIRMPAACAARIFQLTRELGHKSDGETIRWLLQQAEHAIFAATGTGTIPAIAT-NVNGT-----LKIPTEAP 124
                 79**********************************************************99999444.22222.....22222222 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.7E-3045122IPR005333Transcription factor, TCP
PROSITE profilePS5136927.00146100IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008361Biological Processregulation of cell size
GO:0048364Biological Processroot development
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MGAQEKEMED DNHTSIAGNR QIIPKPEPSD PMGTPLPIIQ IPPKRTKDRH TKVEGRGRRI  60
RMPAACAARI FQLTRELGHK SDGETIRWLL QQAEHAIFAA TGTGTIPAIA TNVNGTLKIP  120
TEAPAAAISE DETGKKRRKL QPMRGSDRAF ISSGGAMSIP AGLAPITPMW AIAGGGAAMI  180
APGGVWMVPS SQMWGFPAGS VVVSDGQGGS PTKGEGKQEL QLMREAAEEE QEGGGEEEEG  240
SREPASEKVP DNQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1134138KKRRK
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3', especially at sites IIa (5'-GGGCCCAC-3') and IIb (5'-GGTCCCAC-3') (essential for meristematic tissue-specificity expression) of the PCNA gene promoter. {ECO:0000269|PubMed:12000681}.
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3', especially at sites IIa (5'-GGGCCCAC-3') and IIb (5'-GGTCCCAC-3') (essential for meristematic tissue-specificity expression) of the PCNA gene promoter. {ECO:0000269|PubMed:12000681, ECO:0000269|PubMed:9338963}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00667PBMTransfer from GSVIVG01027588001Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020575223.10.0transcription factor PCF2-like
SwissprotA2YXQ16e-56PCF2_ORYSI; Transcription factor PCF2
SwissprotQ6ZBH66e-56PCF2_ORYSJ; Transcription factor PCF2
TrEMBLA0A1D6ZNE80.0A0A1D6ZNE8_PHAEQ; TCP transcription factor
STRINGXP_008776516.13e-65(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39123167
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45680.16e-37TCP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]