PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_09021
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family LBD
Protein Properties Length: 190aa    MW: 20378.3 Da    PI: 9.4601
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_09021genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260116.91.2e-36251281101
      DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq...pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelal 96 
                 +C aCk+lrrkCa++Cv+a +f  eq   p++fa+vhk+FGa+nv+k+lk +p+++r++a+ +++yeA+ar+ dPv G+vg+i +l++q++ql++el+ 
  PEQU_09021  25 PCGACKFLRRKCAAGCVFAAHFGREQvssPARFAAVHKVFGARNVSKFLKLVPPDHRREAVVTVCYEAQARLCDPVLGCVGTIIALHHQVAQLQTELSI 123
                 7*********************77664337********************************************************************* PP

      DUF260  97 lkeel 101
                 ++++l
  PEQU_09021 124 VQSQL 128
                 99985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.54524128IPR004883Lateral organ boundaries, LOB
PfamPF031951.4E-3625125IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MLSTASRKTK TAAKPSGTPF STTSPCGACK FLRRKCAAGC VFAAHFGREQ VSSPARFAAV  60
HKVFGARNVS KFLKLVPPDH RREAVVTVCY EAQARLCDPV LGCVGTIIAL HHQVAQLQTE  120
LSIVQSQLIN SRLAAAAATA AAGVFRYSET QQQLVAIHPT YSTSSVSNNF NFSSFPSSVF  180
DVCDSHSLEQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-342412910112LOB family transfactor Ramosa2.1
5ly0_B3e-342412910112LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020699320.13e-77LOB domain-containing protein 20
SwissprotQ9SRV31e-50LBD20_ARATH; LOB domain-containing protein 20
TrEMBLA0A2I0VT398e-76A0A2I0VT39_9ASPA; LOB domain-containing protein 20
STRINGXP_008777051.18e-55(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP140852526
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03760.11e-51LOB domain-containing protein 20