PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_08153
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family TCP
Protein Properties Length: 395aa    MW: 42796.8 Da    PI: 7.52
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_08153genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP101.31.7e-31501973114
         TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt............................ssssasec 73 
                 g+kdrh k+ T +g+RdRR Rls ++a+ f+dLqd+LG+d++sk+++WL+++a +ai +l+++                             s+s+s c
  PEQU_08153  50 GGKDRHRKVWTTKGLRDRRFRLSFSTAIDFYDLQDRLGYDQPSKAVDWLIKAADAAIADLPELdgelplppdivlpsranlpdraaaaeqqISQSKSTC 148
                 78******************************************************************9999999998888776655553322222333 PP

         TCP  74 eaesssssasnsssg............kaaksaakskksqksaasalnlakes 114
                 +++s+ s++s    +            +++++++k++++++ a+++ nl  +s
  PEQU_08153 149 SSASETSKGS----TlslsrcqvgglaRENTAKEKKNEQDATAHQHPNLITHS 197
                 4444444444....034447888887555555556666666666666666655 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.1E-3150185IPR005333Transcription factor, TCP
PROSITE profilePS5136926.32851109IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MEPEGIHSSK RLRRDKDEEN GDVKGIGGLR PWQPWRNTSS RIIRVSRVSG GKDRHRKVWT  60
TKGLRDRRFR LSFSTAIDFY DLQDRLGYDQ PSKAVDWLIK AADAAIADLP ELDGELPLPP  120
DIVLPSRANL PDRAAAAEQQ ISQSKSTCSS ASETSKGSTL SLSRCQVGGL ARENTAKEKK  180
NEQDATAHQH PNLITHSSFT ELLTAGSTTE MADCGTGFGQ KQLRPQLAAS TADYFGQAGI  240
FGQVHKIPQL MPGYSSMLHT GNNPHMGMGM LAYNAAVAGD HQDMQHYSLM QDHVIPVAAM  300
APGVDYDLNV SISSVSTGFN RGTLQSNSPH HHHLVEGANL PFFLGASIPI ADAEGASSEN  360
QYLGGFNGRL QVCCNESHRH PKLKGEGKGS SPHGA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A1e-2057110255Putative transcription factor PCF6
5zkt_B1e-2057110255Putative transcription factor PCF6
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ4396070.0HQ439607.1 Phalaenopsis hybrid cultivar candidate developmental transcription factor TCP5 mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020586920.10.0transcription factor TCP2-like
RefseqXP_020586921.10.0transcription factor TCP2-like
RefseqXP_020586922.10.0transcription factor TCP2-like
RefseqXP_020586923.10.0transcription factor TCP2-like
RefseqXP_020586924.10.0transcription factor TCP2-like
RefseqXP_020586925.10.0transcription factor TCP2-like
TrEMBLA0A1D6ZNH40.0A0A1D6ZNH4_PHAEQ; TCP transcription factor
STRINGXP_008784856.11e-104(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30943271
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18390.23e-24TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2