PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_07445
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family WRKY
Protein Properties Length: 356aa    MW: 38916 Da    PI: 4.9431
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_07445genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.68.4e-31155213259
                 --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                 +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers++dp++++itY+++Hnh+
  PEQU_07445 155 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCSARKQVERSRTDPNMLVITYTSDHNHP 213
                 699************************998****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081132.535149215IPR003657WRKY domain
Gene3DG3DSA:2.20.25.808.8E-31152215IPR003657WRKY domain
SuperFamilySSF1182905.36E-26153215IPR003657WRKY domain
SMARTSM007748.6E-37154214IPR003657WRKY domain
PfamPF031061.5E-25156213IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MCDYFWQRME KGQGDLTDIF QGSGLAGPVS TSADIPTITT DTSWQPHLDP AATIPSSTDG  60
FQENFTGIKD PMLHELVGTG FFGYTEKLAE SMAIAVVKQP PLAGLTDAGK IGGGVAIPVP  120
RTQGIKRRKN QARKVVCIPA PAAASNKPGG EVVPSDLWAW RKYGQKPIKG SPYPRGYYRC  180
SSSKGCSARK QVERSRTDPN MLVITYTSDH NHPWPTQRNA LAGSTRSQCN SKNNNNASSS  240
KTSSTDQKLV PVENVSTREE EEEEEQEVEE EEEAQGSPIS SSLPLVKESE NNTLPEHFHH  300
DFNQGIHKSF NELEPDDFFA DLAVLEASTM SLDGEKSNNK AMDPFNMFGW DGGNSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B1e-24130216380Disease resistance protein RRS1
5w3x_D1e-24130216380Disease resistance protein RRS1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020577525.10.0probable WRKY transcription factor 14
SwissprotQ9SA802e-68WRK14_ARATH; Probable WRKY transcription factor 14
TrEMBLA0A2I0W9541e-163A0A2I0W954_9ASPA; Putative WRKY transcription factor 14
STRINGOS04T0597300-011e-87(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25923888
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30650.11e-67WRKY DNA-binding protein 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]