PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_03041
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family bHLH
Protein Properties Length: 497aa    MW: 55364.9 Da    PI: 6.3856
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_03041genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.22.6e-12354400455
                 HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                 +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YI +Lq
  PEQU_03041 354 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAIGYITDLQ 400
                 799***********************66......*****************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142156.8E-4857231IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.698350399IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.77E-14353404No hitNo description
SuperFamilySSF474593.4E-18353412IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.1E-10354400IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.8E-17354411IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.8E-16356405IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 497 aa     Download sequence    Send to blast
MGSCCFDRAE AVLSSDWSDQ DQAMAVAVLG LNAFEYLQTS RVSSDSLVCS AGAAADLQTK  60
LINLVESPGG AGWSFAIFWQ ISRFKSGDLV LGWGDGHLRE PEIESLGSLD DVQQKMRKRV  120
LQKLHLLHGG YEDDNYALGL DCVTDTEMFF LASMYFAFPD GEGAPGRALL HRKHIWNDPL  180
SENYCVRAFL AKAAGFRTIV LVPFENGVLE LGSVDVIPES MEALMMIRSV FSKGAEWLKV  240
FGNDLEIERA ERPSGLIANN REAVNWNKNR SFVPQHLKAR NGLAVMRGEV KPKGQGFVHK  300
HQQPSPASKR IDFASHENSD AEASCKEDKP SIIDERRPRK RGRKPANGRE EPLNHVEAER  360
QRREKLNQRF YALRAVVPNI SKMDKASLLG DAIGYITDLQ KRLKEMESRT KMTPDVEVQT  420
GQEELIVQVN CPLDSHPASV VIQAFNELQF TSVESKMSAT DDCVFHTFVV KLPGGTEQAA  480
KEKFFTVISC QMNPSAQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4yz6_A3e-26572329193Transcription factor MYC3
4rs9_A3e-26572329193Transcription factor MYC3
4rqw_B3e-26572329193Transcription factor MYC3
4rqw_A3e-26572329193Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1335343RRPRKRGRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010912147.11e-169PREDICTED: transcription factor bHLH13
SwissprotQ9ZPY81e-128AIB_ARATH; Transcription factor ABA-INDUCIBLE bHLH-TYPE
TrEMBLM0RZU51e-155M0RZU5_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr1P14370_0011e-155(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51743860
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46510.11e-129ABA-inducible BHLH-type transcription factor