PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_02874
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family GRAS
Protein Properties Length: 497aa    MW: 54173.9 Da    PI: 8.282
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_02874genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS307.82.6e-9415349627373
        GRAS  27 lselaspdgdpmqRlaayfteALaarlarsvselykal.ppsetseknsseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQ 124
                 l+  a+++g+p qRl+a+++ ALaar++       +al p+s+ s+  +se+l++ ++++e sP++k++ ++aN aIl+a++ ++++Hi+Dfdi+qGlQ
  PEQU_02874 153 LKGAANKHGNPEQRLTAMMVDALAARINP------RALaPVSKISDIFTSEHLTSSQMLYESSPCFKLALMAANLAILDATKDQSMIHIVDFDIGQGLQ 245
                 677899**********************9......555244555544599************************************************* PP

        GRAS 125 WpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsl 220
                  +++l++La+R+   ps++iT++ +p+      + +l+ +g+rLak+Aeel + ++f++ v +r+++l+  +L++k +EalaVn+++ l r+ desvs 
  PEQU_02874 246 LASFLHSLAERK-LHPSVKITAFCDPTFRfnsLAGNLNLVGNRLAKLAEELCIGLRFSI-VNRRTTELDRAALDCKAEEALAVNFAFLLSRIADESVSP 342
                 ***********6.559*********99878878899**********************9.799************************************ PP

        GRAS 221 eserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl.eaklpreseerikvErellgreivnvvacegaerrerhetlekWrer 318
                 +++rde+L+ vk l Pkvv++veqe++ n+++F++rf+ea+ +y al++s+ ++ ++r+s+er+ +E+  l+r+ +n v  ega+r+er e ++kW++r
  PEQU_02874 343 ANPRDELLRRVKALGPKVVTLVEQEMNGNTSPFAARFAEACAHYGALLESMeAVMASRASNERARIEAG-LARKSCNSVVWEGAQRVERPEVYGKWKAR 440
                 ***************************************************555566778*********.99*************************** PP

        GRAS 319 leeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaW 373
                 l++aGFkpv+l+ +++++++l l+    + g++++ee+g +  gW++r ++++SaW
  PEQU_02874 441 LGMAGFKPVQLGPEVVENVSLRLASPVnKPGFMLKEEDGRVGCGWMGRIITVASAW 496
                 ********************98887666**************************** PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098543.79191476IPR005202Transcription factor GRAS
PfamPF035148.9E-92153496IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 497 aa     Download sequence    Send to blast
MENEAQSVVF VRSVKQKKQL QSPISSLSPT SSIQSSLSSA TIPLLRQGNQ KFSYQSFPAP  60
GSAELEKKST ITNRLLQLER QLLDDEDDVL SVSDGSAVTN SEWSETMKNL ILSQKPLEYS  120
PNSSSSSFSA SSTASSRQML LDTARAISEG NVLKGAANKH GNPEQRLTAM MVDALAARIN  180
PRALAPVSKI SDIFTSEHLT SSQMLYESSP CFKLALMAAN LAILDATKDQ SMIHIVDFDI  240
GQGLQLASFL HSLAERKLHP SVKITAFCDP TFRFNSLAGN LNLVGNRLAK LAEELCIGLR  300
FSIVNRRTTE LDRAALDCKA EEALAVNFAF LLSRIADESV SPANPRDELL RRVKALGPKV  360
VTLVEQEMNG NTSPFAARFA EACAHYGALL ESMEAVMASR ASNERARIEA GLARKSCNSV  420
VWEGAQRVER PEVYGKWKAR LGMAGFKPVQ LGPEVVENVS LRLASPVNKP GFMLKEEDGR  480
VGCGWMGRII TVASAWH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-4013649712375GRAS family transcription factor containing p
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008783453.11e-153PREDICTED: scarecrow-like protein 8
TrEMBLM0SY101e-150M0SY10_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr5P12810_0011e-149(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP41883474
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52510.11e-96SCARECROW-like 8