PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_00455
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family AP2
Protein Properties Length: 184aa    MW: 21468.9 Da    PI: 10.0356
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_00455genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.84.8e-171777156
         AP2  1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkklege 56
                s y+GV++++++gr++A+++d  ++n    k+ ++++lg ++ +e Aa+a++ a++k++g+
  PEQU_00455 17 SVYRGVTRHRWTGRYEAHLWDkNCWNEsqnKKgRQVYLGAYDEEEAAARAYDLAALKYWGH 77
                78*******************999955656446*************************997 PP

2AP254.23.6e-17119170155
         AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa a+++a+ +++g
  PEQU_00455 119 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAAIAYDKAAIEYRG 170
                 89****99**********99966...3.6*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008478.0E-141777IPR001471AP2/ERF domain
SuperFamilySSF541715.75E-181786IPR016177DNA-binding domain
PROSITE profilePS5103220.3231884IPR001471AP2/ERF domain
SMARTSM003801.8E-271890IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.4E-171886IPR001471AP2/ERF domain
PRINTSPR003671.4E-61930IPR001471AP2/ERF domain
PfamPF008471.9E-12119170IPR001471AP2/ERF domain
CDDcd000182.70E-22119180No hitNo description
SuperFamilySSF541714.64E-18119180IPR016177DNA-binding domain
SMARTSM003802.9E-25120184IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-18120179IPR001471AP2/ERF domain
PROSITE profilePS5103217.938120178IPR001471AP2/ERF domain
PRINTSPR003671.4E-6160180IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
RKSRKSVPRD FPSQRSSVYR GVTRHRWTGR YEAHLWDKNC WNESQNKKGR QVYLGAYDEE  60
EAAARAYDLA ALKYWGHDTT LNFPLSNYEE EVKDMDGLSK EEYIGTLRRK SSGFSRGVSK  120
YRGVARHHHN GRWEARIGRV FGNKYLYLGT YATQEEAAIA YDKAAIEYRG LNAVTNFKLS  180
HYIK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011020562.11e-119PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060 isoform X1
SwissprotQ94AN43e-99AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A0D2Q6I21e-117A0A0D2Q6I2_G
STRINGOB09G17420.11e-116(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33193678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16060.18e-95ARIA-interacting double AP2 domain protein