PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s993331g001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family ERF
Protein Properties Length: 557aa    MW: 63176.2 Da    PI: 9.7993
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s993331g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.42.8e-16129180155
                AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa a++ a+ +++g
  PDK_30s993331g001 129 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAAIAYDMAAIEYRG 180
                        89****99**********99966...3.6*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.9E-17129190IPR016177DNA-binding domain
PfamPF008478.5E-12129180IPR001471AP2/ERF domain
CDDcd000183.85E-22129190No hitNo description
SMARTSM003804.6E-25130194IPR001471AP2/ERF domain
PROSITE profilePS5103218.189130188IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.6E-17130189IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 557 aa     Download sequence    Send to blast
MKRTRRSVPR DSPLQRSSIY RGVTSKRRKP PHISLTNEMR TKKRKEMTLK RLIPKTNHNP  60
VSHGRTGTGG RADTRPIYGT RPAGMNPKTK KESKLSTYEE ELKEMEGQSK EEYIGSLRRK  120
SSGFSRGVSK YRGVARHHHN GRWEARIGRV FGNKYLYLGT YATQEEAAIA YDMAAIEYRG  180
LNAVTNFDLS RYIKWLRPNH DGSNASPSID PLPNPALADH TCDVQQSFHQ HQQSVGEISQ  240
FPEQRASGVA ASSALGLLLQ SPKFKEMLER TSAASGSSSS PKFDSKPSRC SFPDDIQTYF  300
ESPDSGSYTE GDDAIFGELH AFTSSMLEFE LDAYLVSMAY LNLMRGEGLV ENYDHALFCY  360
VGIHAKIGWF EAFDELVRFH REVRDGQRRR ERGSRVEEKE TRRKKHAGSD GDPNPREVEG  420
NPRGRPEKEI RGIREVEEEK EVLEGGDDGN LTEVEGNYGG GVAREEDGKR NSKKKGVNDA  480
RESSELGGRN EKKMEVEGER RKEEKKRRRE MGEERRDGGG KKRRNSDDGE ENEGGGLDDQ  540
SERHKKKKKR RKIGTEE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1506523RRREMGEERRDGGGKKRR
2541547ERHKKKK
3545550KKKKRR
4545551KKKKRRK
5546550KKKRR
6546551KKKRRK
7547551KKRRK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008790117.10.0PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLF6HYM61e-110F6HYM6_VITVI; Putative uncharacterized protein
STRINGVIT_11s0037g00870.t011e-109(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33193678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79700.22e-63AP2 family protein