PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s977061g001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family bHLH
Protein Properties Length: 325aa    MW: 36370.2 Da    PI: 4.5227
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s977061g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.58.5e-12160202754
                        HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                        ++ErrRR+r+N++++ Lr+++Pk +      K++  +iL  +++Y+k+L
  PDK_30s977061g001 160 MAERRRRKRLNDRLSLLRSIVPKiS------KMDRTSILGDTIDYVKEL 202
                        79*********************66......****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.996153202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.18E-15157223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.1E-12159208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-14160220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.75E-5160207No hitNo description
PfamPF000102.3E-9160202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MEIDEQSLLQ ELFAPWRETV EPSCFQGGID CFQGTASPVV SPNYAPFEEL VLQAEPNFDC  60
LSEVYCPFGS GFLSAAPEFQ SSCTMTTHST ISCSTQENEE IGVIPEGSHS TWYQEQSIWK  120
VEPMQTMDTP LVFGGAGSSC LERRNSRPKK VDGLPSKNLM AERRRRKRLN DRLSLLRSIV  180
PKISKMDRTS ILGDTIDYVK ELLERIKSLQ EEIKVGQDQL NLLDTLHGVN PNEMLPRISP  240
KFHVERREGD TRIDISCTAK PGLLLSSVYT LEALGLEIQQ CVASCFSDFG MQASCSEDKE  300
QRAFISSEEI EQALFRTAVY GGECV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1161168ERRRRKRL
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008791955.20.0transcription factor bHLH93-like
SwissprotQ9LSL11e-71BH093_ARATH; Transcription factor bHLH93
TrEMBLA0A2H3Y1C60.0A0A2H3Y1C6_PHODC; transcription factor bHLH93-like
STRINGXP_008791955.11e-141(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13023799
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65640.13e-66beta HLH protein 93
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Sharma N, et al.
    NO FLOWERING IN SHORT DAY (NFL) is a bHLH transcription factor that promotes flowering specifically under short-day conditions in Arabidopsis.
    Development, 2016. 143(4): p. 682-90
    [PMID:26758694]
  4. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]
  5. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]