PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s973611g006
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family Trihelix
Protein Properties Length: 159aa    MW: 17633.2 Da    PI: 10.3898
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s973611g006genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix43.77.1e-1417901686
           trihelix 16 emeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86
                        ++e l+rg+l++ +We+v+  +     +++  +s +qCk+k++nl+kryk + ++ +++   ++s++p+f+++e
  PDK_30s973611g006 17 GRGEGLNRGNLRGRDWEDVATIVsdrcDKQKAGKSVEQCKNKIDNLKKRYKVECQRLSSG-GLAVSHWPWFKKME 90
                       5678899***********98777666699999**************************98.78889********8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.6E-152492No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
MASFFPDFDF PTERARGRGE GLNRGNLRGR DWEDVATIVS DRCDKQKAGK SVEQCKNKID  60
NLKKRYKVEC QRLSSGGLAV SHWPWFKKME QIVGSSSSSS KTAGDEDKSG ALGGTGVVTR  120
QMKRSLLPLP LLFSILILSS MFSPTLSFFL RSGLFYANA
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM0764893e-83AM076489.1 Cocos nucifera partial mRNA for receptor-like kinase (CnLI gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008813118.12e-66PREDICTED: uncharacterized protein LOC103723839
TrEMBLM0T6P08e-52M0T6P0_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr6P13420_0012e-51(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19353442
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10030.24e-31Trihelix family protein