PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s972061g001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family Trihelix
Protein Properties Length: 273aa    MW: 30806.7 Da    PI: 8.7552
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s972061g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix47.93.5e-1546129186
           trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                        +W++  v  L+++++ ++   +r+klk+++We+v++++     +    ++p+qCk+k e+++kry+ + +  ++      s++p+f +l+
  PDK_30s972061g001  46 EWSEGAVASLLDVYEAKWVLRNRAKLKGHDWEDVARVVaaqsGSARPAKTPTQCKNKVESMKKRYRSESAAGGR------SRWPLFARLD 129
                        5*************************************84433333356******************9998887......5799999986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138374.5E-1944129No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MEGNLQQVDN NANNPSLAAV GVDDSKEEEE HARVVGPGSD RSKRDEWSEG AVASLLDVYE  60
AKWVLRNRAK LKGHDWEDVA RVVAAQSGSA RPAKTPTQCK NKVESMKKRY RSESAAGGRS  120
RWPLFARLDG LVRCRSPTTA LVSVDRPPGR PAPSSHSPEP NVAAVAKQAE CEETKGKEHV  180
NEIHKEHCNM QPYDPCDGKQ KINDRKKRRM REREEKESWK VMESIQWLAE VALRVEQGRM  240
EAMREVERMR ALIVPRQNIN FSCHSACSCF HAQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1204210RKKRRMR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008803366.11e-148PREDICTED: uncharacterized protein LOC103716939, partial
TrEMBLA0A078JXT82e-53A0A078JXT8_BRANA; BnaAnng37740D protein
STRINGBra007069.1-P2e-50(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP73333346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54390.13e-41sequence-specific DNA binding transcription factors