PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s946471g006
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family C2H2
Protein Properties Length: 214aa    MW: 23721.6 Da    PI: 5.9495
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s946471g006genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.90.000162648123
                       EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                       ++C++C + F ++  L  H++ H
  PDK_30s946471g006 26 FSCNYCQRKFYSSQALGGHQNAH 48
                       89******************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.03E-62553No hitNo description
PROSITE profilePS5015711.0942653IPR007087Zinc finger, C2H2
PROSITE patternPS0002802848IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MEPENLELNL GLALQPSSLP EPAGVFSCNY CQRKFYSSQA LGGHQNAHKL ERSLAKRSRE  60
LASVLHKHAT STGAESERLR KEGKYNVGRP VSREEMRAST WPGSYKGSND KGGLADEMDL  120
SLSSFHLLDE VALENEKGSG YSMIGIRSLF HKNVLDCTNL EYNEGVDCLN VPSYCSSQLI  180
LMPIWKGDSW WESPGIPIRT GNDWVLTSSG DLQL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017701026.11e-121uncharacterized protein LOC103718394
TrEMBLA0A2H3ZXZ81e-120A0A2H3ZXZ8_PHODC; uncharacterized protein LOC103718394
STRINGXP_008805413.14e-83(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18336274
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57520.11e-20zinc finger protein 2