PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s934281g002
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family C2H2
Protein Properties Length: 176aa    MW: 20043.7 Da    PI: 7.6045
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s934281g002genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.40.000473658123
                       EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                       y C+ C+k F +  +L  H+ +H
  PDK_30s934281g002 36 YICSFCNKAFQTLQSLGGHQTSH 58
                       89*****************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.49E-63461No hitNo description
Gene3DG3DSA:3.30.160.607.4E-53461IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139122.5E-93561IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.5963663IPR007087Zinc finger, C2H2
PROSITE patternPS0002803858IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MRTGSGVAPS QWSKGSPVPE IREEPRFRAE MASQRYICSF CNKAFQTLQS LGGHQTSHRR  60
EIKEMRKQHE AFMEAQRLTP RPLRASSGSP GICMVPLTPN YAYWEALRRA NQSPVVINFI  120
EIHSPEVSQQ HPRPSQMDEM AHSSEETITD PMLTLRREVD QGEEVNSLNP DLTLKL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010943591.12e-86transcriptional regulator SUPERMAN-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2080966
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G27880.12e-08C2H2 family protein