PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s925071g014
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family C2H2
Protein Properties Length: 501aa    MW: 55095.8 Da    PI: 6.8425
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s925071g014genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H222.53e-07261282223
                        EETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                         Cp+C+k F+r+ nL+ H+r H
  PDK_30s925071g014 261 FCPICKKGFKRSANLRMHMRGH 282
                        6*******************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.46E-6258284No hitNo description
Gene3DG3DSA:3.30.160.602.8E-6259311IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.157260287IPR007087Zinc finger, C2H2
SMARTSM003550.0014260282IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280262282IPR007087Zinc finger, C2H2
SMARTSM0035557309342IPR015880Zinc finger, C2H2-like
SMARTSM0035520347369IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 501 aa     Download sequence    Send to blast
MDHMQIPTSE ASSSMSNQSE NINPNQLFTQ FGGKSLSYGA GSGQSFPKYS QNLDFSSIWP  60
YDSEQVVKTP DQVAPFANSQ MGEAVDWDPR AMLNNLIFID QKIHQVQDVI HSAIDIEGPF  120
SIQPTELAVK QQLVTTDLAY IISQLISTVG NLLPSINNTL LSNTPPVGKM GGTVGSTPSF  180
ALTGTLQQNK GFSSEKNVVM EHKDLTRSLT DSGNEGIKPV PVKHHDVKVH KDSLDGENLP  240
AGSYEILEPK KEDILAPHPH FCPICKKGFK RSANLRMHMR GHGDEYKTPA ALAKPSNEAS  300
SEPVLIKRYS CPIVGCKRNR EHEKFQPLKT ILCVKNHYKR SHCDKSYTCS RCNAKKFSVL  360
ADLKTHEKHC GCDRWLCSCG TSFSRKDKLL GHANLFPGHS PAISTGDVKD SGVTDQGRNI  420
ETITEIGSLG HNFPGNSVDD LDDDPCYFSP MNFGSFKYGG LGDSPQQALD ASESWFSPSE  480
PCNIVQNNGD NSNLDHLGKW R
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in aluminum tolerance. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008784214.10.0zinc finger protein STOP1 homolog
SwissprotQ943I61e-152STOP1_ORYSJ; Zinc finger protein STOP1 homolog
TrEMBLA0A2H3XID90.0A0A2H3XID9_PHODC; zinc finger protein STOP1 homolog
STRINGXP_008784214.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP151238111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34370.21e-130C2H2 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]