PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s906281g001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family TCP
Protein Properties Length: 337aa    MW: 38049.6 Da    PI: 8.8456
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s906281g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP126.62.6e-391322752133
                TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..............ssssaseceaesss 79 
                        + +kdrhski T++g+RdRR+Rls e+a +fF Lqd LGfdk+s+t++WLl+q+k ai++l +                 ss sec   s  
  PDK_30s906281g001 132 PLRKDRHSKIFTAQGLRDRRMRLSQEVASKFFNLQDLLGFDKASQTVDWLLTQSKSAIQQLIDAsqlennsinlssfvRESSTSEC--FSAI 221
                        579*************************************************************6666666555544433333444..3444 PP

                TCP  80 ssasnsssgkaaksaakskksqksaasalnlakesrakarararertrekmrik 133
                        s+++++s+++++k++  + ++ + a+  + l ke rakarararertrek+ri 
  PDK_30s906281g001 222 SNDKQKSAAASSKAKDIGLQPLSIATLDRTLTKEMRAKARARARERTREKKRIP 275
                        44444444455555558888888888899*********************9986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136932.189134192IPR017887Transcription factor TCP subgroup
PfamPF036343.7E-39134273IPR005333Transcription factor, TCP
PROSITE profilePS5137011.613254271IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048831Biological Processregulation of shoot system development
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
YWYPRHQYED SYGHVFSPTS IIRWVNLGTS NGISTIFHQM LPNPSPQYLA ESYFVGDEDQ  60
DNSPSIPKDC YPSFFSFPLS PPNFDHELLT AHLTTTHNLE PPTLSIPDPA VDMDTTTNVP  120
PTTRSSSRRK RPLRKDRHSK IFTAQGLRDR RMRLSQEVAS KFFNLQDLLG FDKASQTVDW  180
LLTQSKSAIQ QLIDASQLEN NSINLSSFVR ESSTSECFSA ISNDKQKSAA ASSKAKDIGL  240
QPLSIATLDR TLTKEMRAKA RARARERTRE KKRIPSGRHE DSCKEDQPSS KTTDAVKEAV  300
CINGVDQLSP VTMVPSRLVY NNNNTISLLD EQHKFPK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00215DAPTransfer from AT1G67260Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008803033.11e-162transcription factor CYCLOIDEA-like
TrEMBLA0A2H3YSZ61e-160A0A2H3YSZ6_PHODC; transcription factor CYCLOIDEA-like
STRINGXP_008803033.11e-161(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40523172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67260.22e-23TCP family protein