PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s905941g001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family TCP
Protein Properties Length: 243aa    MW: 26412.6 Da    PI: 6.6332
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s905941g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP107.91.6e-3377182489
                TCP   4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt........ssssaseceaesssssasnsss 87 
                        ++ ++sk++T++g RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak+ai+elt++         ++++s++++++ + +a+++++
  PDK_30s905941g001  77 QQEQKSKVCTAKGTRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKNAKAAIDELTELpgryptasAFNPPSASNPQETQAAAAADNQ 168
                        56789*********************************************************998876663333334444444444443333 PP

                TCP  88 g............k 89 
                        +            +
  PDK_30s905941g001 169 PggdsgntpipvaE 182
                        33334444444441 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.7E-2877161IPR005333Transcription factor, TCP
PROSITE profilePS5136927.11877135IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MAKPLHHEDL NPHRTGKGKE DCVPIGGIVR FGAVPAEVVL MVMGFWELDG QAFWKRRQEK  60
HQHQHQRILF PEQQQQQQEQ KSKVCTAKGT RDRRVRLSAH TAIQFYDVQD RLGYDRPSKA  120
VDWLIKNAKA AIDELTELPG RYPTASAFNP PSASNPQETQ AAAAADNQPG GDSGNTPIPV  180
AEPVASAAFG FGGGSGSASF LPPSLDSDAI ADTIKAKRST TESPTSRPLL PLLLTIDGAE  240
EEN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A6e-2182135154Putative transcription factor PCF6
5zkt_B6e-2182135154Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4688633e-58AM468863.2 Vitis vinifera contig VV78X023076.3, whole genome shotgun sequence.
GenBankFQ3818313e-58FQ381831.1 Vitis vinifera clone SS0ABG82YF20.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008784441.14e-74transcription factor PCF5-like
RefseqXP_008784506.14e-74transcription factor PCF5-like
RefseqXP_017698427.14e-74transcription factor PCF5-like
RefseqXP_017698481.14e-74transcription factor PCF5-like
RefseqXP_026659949.14e-74transcription factor PCF5-like
SwissprotQ8LT077e-42PCF5_ORYSJ; Transcription factor PCF5
TrEMBLA0A2H3ZQR11e-72A0A2H3ZQR1_PHODC; transcription factor PCF5-like
STRINGXP_008784441.12e-73(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58393355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15030.37e-32TCP family protein