PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s900381g005
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family Trihelix
Protein Properties Length: 322aa    MW: 37161.5 Da    PI: 4.6103
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s900381g005genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix55.12e-17294176
           trihelix  1 rWtkqevlaLiearr.........emeerlrrgk...............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekk 70
                       +Wt++ v++Li+++                                   +kk++W+ vs  m+e g  +sp+qC++k++++nkryk++ ++ + 
  PDK_30s900381g005  2 KWTDEVVRLLIRIVAfvgddcayeA--------VdgtagaakrkhgaafQKKGKWKMVSLLMQENGAYVSPQQCEDKFNDMNKRYKRLHDILGP 87
                       7**************6666555552........0233334446667777*****************************************9998 PP

           trihelix 71 r.tsess 76
                       + +++++
  PDK_30s900381g005 88 GaSCNVV 94
                       8456655 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138375.4E-162129No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MKWTDEVVRL LIRIVAFVGD DCAYEAVDGT AGAAKRKHGA AFQKKGKWKM VSLLMQENGA  60
YVSPQQCEDK FNDMNKRYKR LHDILGPGAS CNVVHDPASL ESMPISQKAK NDVKKILSSK  120
HLFYQEMCAY HTGQRIPNCP DINLQSSLLS HAAPSKDGNQ CVDGEEEEED EEEEDEKEDD  180
DDSGGNEEEG SEEVGRGRFE GFLAEIDAVL QDPTRPPLER REWLKMRALQ LEEERLDIET  240
EALAIERQRF KWQRFSSKKD REIERSRLEN ERLMLENEQL MIQVRKEELE LDFRRSGDPL  300
ESAGFRMEEE RGREQMEPGR VH
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010928865.10.0PREDICTED: uncharacterized protein LOC105050511
TrEMBLA0A067JQ021e-103A0A067JQ02_JATCU; Uncharacterized protein
STRINGPOPTR_0003s20370.11e-97(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1947058
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21200.12e-46sequence-specific DNA binding transcription factors