PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s890781g001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family GeBP
Protein Properties Length: 308aa    MW: 33805.9 Da    PI: 4.884
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s890781g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF5731032.5e-3222119497
             DUF573   4 qrlwseeDeivlLqGlidfkaktgk..spsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.aksgkepsfskehdqkifel 91 
                         rlw +eDei++L+G+++f++++g+   +++ d+  fye +kk+++++++k+ql+eK+rrLKkK+++ v + ++ gk+++f+++h+q i+++
  PDK_30s890781g001  22 VRLWPDEDEITILKGFLEFTSRRGTtfASHQyDTGPFYEEIKKQLQLEFTKNQLIEKLRRLKKKYRNVVGRmRSMGKDFAFKSPHEQAIYDI 113
                        59**********************99877778**************************************97889***************** PP

             DUF573  92 skkiWg 97 
                        ++ iW 
  PDK_30s890781g001 114 ARNIWS 119
                        *****6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.3E-3023119IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MPSAEEEEER AVFDDDDDDD DVRLWPDEDE ITILKGFLEF TSRRGTTFAS HQYDTGPFYE  60
EIKKQLQLEF TKNQLIEKLR RLKKKYRNVV GRMRSMGKDF AFKSPHEQAI YDIARNIWSA  120
NVKRARDSDD DDLNTPNNAY TIEATSVADG ATNSDRRMSR SRRRSRRGAA EEAAAPTVGV  180
PVENSVPATE VPSSEAASVP GIIEETVKSC LSPLFKELIY SATGGPLGSG LSGGAALLGL  240
GLGGVGAALS PLPLSLSGSP ASLPASGTIV DEKWKKQHIL ELEVYLKRIE LLRDQIKSTL  300
EELKSSGS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_026657246.10.0probable transcription factor At3g04930
TrEMBLA0A3Q0HRM10.0A0A3Q0HRM1_PHODC; probable transcription factor At3g04930
STRINGXP_008778158.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP97437123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28040.19e-44DNA-binding storekeeper protein-related transcriptional regulator